Variant report

Variant	rs73708861
Chromosome Location	chr7:96758691-96758692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96757705..96760493-chr7:96778782..96780656,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10265264	1.00[AMR][1000 genomes]
rs28406061	0.83[AMR][1000 genomes]
rs56032835	0.83[AMR][1000 genomes]
rs56962196	1.00[AMR][1000 genomes]
rs58839243	1.00[AMR][1000 genomes]
rs73708847	0.83[AMR][1000 genomes]
rs73708849	0.83[AMR][1000 genomes]
rs73708852	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708854	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708858	0.83[AMR][1000 genomes]
rs73708859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708864	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708865	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708872	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708874	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708875	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708876	0.83[AMR][1000 genomes]
rs73708882	0.83[AMR][1000 genomes]
rs73708886	0.83[AMR][1000 genomes]
rs73708889	0.83[AMR][1000 genomes]
rs73708890	1.00[AMR][1000 genomes]
rs73708893	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96747400-96759800	Weak transcription	Spleen	Spleen
2	chr7:96747600-96759000	Weak transcription	Esophagus	oesophagus
3	chr7:96747600-96768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:96747800-96768200	Weak transcription	Aorta	Aorta
5	chr7:96748000-96759000	Weak transcription	Left Ventricle	heart
6	chr7:96748200-96759800	Weak transcription	Fetal Intestine Small	intestine
7	chr7:96748400-96767200	Weak transcription	Fetal Stomach	stomach
8	chr7:96748400-96768200	Weak transcription	Right Ventricle	heart
9	chr7:96748400-96768400	Weak transcription	Psoas Muscle	Psoas
10	chr7:96748600-96759200	Weak transcription	HMEC	breast
11	chr7:96749000-96768200	Weak transcription	Right Atrium	heart
12	chr7:96749200-96759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:96749200-96768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr7:96749400-96768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:96749400-96768200	Weak transcription	Primary T cells from cord blood	blood
16	chr7:96752400-96766000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:96753600-96759000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr7:96755000-96766800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:96755000-96768000	Weak transcription	Adipose Nuclei	Adipose
20	chr7:96756000-96759600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:96756000-96762600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:96756200-96759000	Weak transcription	Lung	lung
23	chr7:96756200-96767800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:96756400-96759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:96756400-96765600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:96756600-96759000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:96756600-96759000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:96756600-96759600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:96756600-96766400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:96756600-96768000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:96756600-96768000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:96756800-96759000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:96757200-96759000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:96758200-96759600	Enhancers	K562	blood
35	chr7:96758400-96759000	Enhancers	Pancreatic Islets	Pancreatic Islet

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