Variant report

Variant	rs73708859
Chromosome Location	chr7:96750473-96750474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96748725..96750557-chr7:96827125..96829431,2	K562	blood:
2	chr7:96748869..96751979-chr7:96758718..96762589,5	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10265264	1.00[AMR][1000 genomes]
rs28406061	0.83[AMR][1000 genomes]
rs56032835	0.83[AMR][1000 genomes]
rs56962196	1.00[AMR][1000 genomes]
rs58839243	1.00[AMR][1000 genomes]
rs73708847	0.83[AMR][1000 genomes]
rs73708849	0.83[AMR][1000 genomes]
rs73708852	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708854	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708858	0.83[AMR][1000 genomes]
rs73708861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708864	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708865	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708872	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708874	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708875	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708876	0.83[AMR][1000 genomes]
rs73708882	0.83[AMR][1000 genomes]
rs73708886	0.83[AMR][1000 genomes]
rs73708889	0.83[AMR][1000 genomes]
rs73708890	1.00[AMR][1000 genomes]
rs73708893	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96746800-96751800	Active TSS	K562	blood
2	chr7:96747400-96759800	Weak transcription	Spleen	Spleen
3	chr7:96747600-96753000	Weak transcription	Small Intestine	intestine
4	chr7:96747600-96759000	Weak transcription	Esophagus	oesophagus
5	chr7:96747600-96768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:96747800-96768200	Weak transcription	Aorta	Aorta
7	chr7:96748000-96759000	Weak transcription	Left Ventricle	heart
8	chr7:96748200-96759800	Weak transcription	Fetal Intestine Small	intestine
9	chr7:96748400-96750600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr7:96748400-96767200	Weak transcription	Fetal Stomach	stomach
11	chr7:96748400-96768200	Weak transcription	Right Ventricle	heart
12	chr7:96748400-96768400	Weak transcription	Psoas Muscle	Psoas
13	chr7:96748600-96755800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:96748600-96756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:96748600-96759200	Weak transcription	HMEC	breast
16	chr7:96749000-96755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:96749000-96768200	Weak transcription	Right Atrium	heart
18	chr7:96749200-96750600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:96749200-96752000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:96749200-96752800	Weak transcription	Fetal Kidney	kidney
21	chr7:96749200-96755800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:96749200-96759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:96749200-96768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:96749400-96751800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:96749400-96755600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:96749400-96768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:96749400-96768200	Weak transcription	Primary T cells from cord blood	blood
28	chr7:96750200-96752000	Weak transcription	Dnd41	blood
29	chr7:96750400-96750600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr7:96750400-96750600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links