Variant report

Variant	rs73708872
Chromosome Location	chr7:96772097-96772098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLX6-2	chr7:96771985-96772147	NONHSAT122139

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10265264	0.83[AMR][1000 genomes]
rs10266441	1.00[ASN][1000 genomes]
rs56962196	0.83[AMR][1000 genomes]
rs58839243	0.83[AMR][1000 genomes]
rs73708852	0.80[AFR][1000 genomes]
rs73708854	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708859	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708861	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708863	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708864	0.90[AFR][1000 genomes]
rs73708865	0.90[AFR][1000 genomes]
rs73708874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708878	1.00[ASN][1000 genomes]
rs73708882	1.00[AMR][1000 genomes]
rs73708886	1.00[AMR][1000 genomes]
rs73708890	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96760400-96796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:96764400-96773000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:96765400-96772200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr7:96766400-96773000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr7:96768400-96789000	Weak transcription	Aorta	Aorta
6	chr7:96768800-96790400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:96768800-96797800	Weak transcription	Left Ventricle	heart
8	chr7:96769000-96774200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:96769000-96778800	Weak transcription	Fetal Lung	lung
10	chr7:96769000-96789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:96769000-96790000	Weak transcription	Ovary	ovary
12	chr7:96769000-96799600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:96769200-96772600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:96769200-96789800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:96769200-96791200	Weak transcription	Fetal Kidney	kidney
17	chr7:96769400-96793400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:96769600-96780600	Weak transcription	Primary T cells from cord blood	blood
19	chr7:96769600-96783000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:96769600-96788600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:96769600-96788800	Weak transcription	Primary B cells from cord blood	blood
22	chr7:96769600-96789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:96769800-96788400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:96769800-96789000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:96771200-96774600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:96771200-96781000	Weak transcription	K562	blood
27	chr7:96771400-96772600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:96771400-96780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:96771400-96784200	Weak transcription	Liver	Liver
30	chr7:96771400-96818200	Weak transcription	A549	lung
31	chr7:96771600-96773200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:96771600-96777200	Weak transcription	Fetal Intestine Small	intestine
33	chr7:96771600-96784200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:96771600-96786400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:96771800-96772600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:96771800-96779200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:96772000-96772200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr7:96772000-96779200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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