Variant report

Variant	rs58892422
Chromosome Location	chr3:157017091-157017092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs58287058	1.00[AMR][1000 genomes]
rs59252849	1.00[AMR][1000 genomes]
rs59359862	1.00[AMR][1000 genomes]
rs61290537	1.00[AMR][1000 genomes]
rs73873603	1.00[AMR][1000 genomes]
rs73873610	1.00[AMR][1000 genomes]
rs73873611	1.00[AMR][1000 genomes]
rs73873612	1.00[AMR][1000 genomes]
rs73873613	1.00[AMR][1000 genomes]
rs73873617	1.00[AMR][1000 genomes]
rs73873619	1.00[AMR][1000 genomes]
rs73873622	1.00[AMR][1000 genomes]
rs73873624	1.00[AMR][1000 genomes]
rs73873627	1.00[AMR][1000 genomes]
rs73873633	1.00[AMR][1000 genomes]
rs73873646	1.00[AMR][1000 genomes]
rs73873649	1.00[AMR][1000 genomes]
rs73873651	1.00[AMR][1000 genomes]
rs73873652	1.00[AMR][1000 genomes]
rs73873653	1.00[AMR][1000 genomes]
rs73873658	1.00[AMR][1000 genomes]
rs73873660	1.00[AMR][1000 genomes]
rs73873665	1.00[AMR][1000 genomes]
rs73873668	1.00[AMR][1000 genomes]
rs73873671	1.00[AMR][1000 genomes]
rs73873674	1.00[AMR][1000 genomes]
rs73873677	1.00[AMR][1000 genomes]
rs73873679	1.00[AMR][1000 genomes]
rs73873790	1.00[AMR][1000 genomes]
rs73873799	1.00[AMR][1000 genomes]
rs73873801	1.00[AMR][1000 genomes]
rs73873802	1.00[AMR][1000 genomes]
rs73878004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157011200-157017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:157013000-157017400	Weak transcription	HSMMtube	muscle
4	chr3:157013000-157018600	Weak transcription	K562	blood
5	chr3:157013000-157032600	Weak transcription	NH-A	brain
6	chr3:157013200-157017400	Weak transcription	HSMM	muscle
7	chr3:157013200-157017400	Weak transcription	NHLF	lung
8	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:157014400-157018800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:157014400-157019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:157015000-157017400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:157015400-157019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:157016400-157017400	Weak transcription	NHDF-Ad	bronchial
15	chr3:157016400-157017400	Weak transcription	Osteobl	bone
16	chr3:157016400-157017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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