Variant report

Variant	rs73873619
Chromosome Location	chr3:156988497-156988498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156987878..156990782-chr3:156994349..156996892,2	MCF-7	breast:
2	chr3:156988336..156991271-chr3:156994407..156996753,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs58287058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58892422	1.00[AMR][1000 genomes]
rs59252849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59359862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873603	1.00[AMR][1000 genomes]
rs73873610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873660	1.00[AMR][1000 genomes]
rs73873665	1.00[AMR][1000 genomes]
rs73873668	1.00[AMR][1000 genomes]
rs73873671	1.00[AMR][1000 genomes]
rs73873674	1.00[AMR][1000 genomes]
rs73873677	1.00[AMR][1000 genomes]
rs73873679	1.00[AMR][1000 genomes]
rs73873790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73878004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:156967200-157000000	Weak transcription	NH-A	brain
4	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156982400-156992800	Weak transcription	Osteobl	bone
9	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
11	chr3:156987600-156989200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:156988000-156988600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea

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