Variant report

Variant	rs73873671
Chromosome Location	chr3:157113183-157113184
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs58287058	1.00[AMR][1000 genomes]
rs58892422	1.00[AMR][1000 genomes]
rs59252849	1.00[AMR][1000 genomes]
rs59359862	1.00[AMR][1000 genomes]
rs61290537	1.00[AMR][1000 genomes]
rs73873603	1.00[AMR][1000 genomes]
rs73873610	1.00[AMR][1000 genomes]
rs73873611	1.00[AMR][1000 genomes]
rs73873612	1.00[AMR][1000 genomes]
rs73873613	1.00[AMR][1000 genomes]
rs73873617	1.00[AMR][1000 genomes]
rs73873619	1.00[AMR][1000 genomes]
rs73873622	1.00[AMR][1000 genomes]
rs73873624	1.00[AMR][1000 genomes]
rs73873627	1.00[AMR][1000 genomes]
rs73873633	1.00[AMR][1000 genomes]
rs73873646	1.00[AMR][1000 genomes]
rs73873649	1.00[AMR][1000 genomes]
rs73873651	1.00[AMR][1000 genomes]
rs73873652	1.00[AMR][1000 genomes]
rs73873653	1.00[AMR][1000 genomes]
rs73873658	1.00[AMR][1000 genomes]
rs73873660	1.00[AMR][1000 genomes]
rs73873665	1.00[AMR][1000 genomes]
rs73873668	1.00[AMR][1000 genomes]
rs73873674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873677	1.00[AMR][1000 genomes]
rs73873679	1.00[AMR][1000 genomes]
rs73873801	1.00[AMR][1000 genomes]
rs73873802	1.00[AMR][1000 genomes]
rs73878004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157107200-157119000	Weak transcription	Fetal Lung	lung
3	chr3:157107400-157128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:157107800-157123000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:157108000-157115000	Weak transcription	HUVEC	blood vessel
6	chr3:157109000-157115600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:157109400-157122800	Weak transcription	Osteobl	bone
8	chr3:157111200-157113200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:157111800-157113400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157112800-157113400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:157113000-157113400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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