Variant report

Variant	rs73873665
Chromosome Location	chr3:157102184-157102185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156876887..156878614-chr3:157100833..157103015,2	K562	blood:
2	chr3:157101228..157103194-chr3:157138497..157140030,2	K562	blood:
3	chr3:157096612..157098371-chr3:157102022..157103656,2	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs58287058	1.00[AMR][1000 genomes]
rs58892422	1.00[AMR][1000 genomes]
rs59252849	1.00[AMR][1000 genomes]
rs59359862	1.00[AMR][1000 genomes]
rs61290537	1.00[AMR][1000 genomes]
rs73873603	1.00[AMR][1000 genomes]
rs73873610	1.00[AMR][1000 genomes]
rs73873611	1.00[AMR][1000 genomes]
rs73873612	1.00[AMR][1000 genomes]
rs73873613	1.00[AMR][1000 genomes]
rs73873617	1.00[AMR][1000 genomes]
rs73873619	1.00[AMR][1000 genomes]
rs73873622	1.00[AMR][1000 genomes]
rs73873624	1.00[AMR][1000 genomes]
rs73873627	1.00[AMR][1000 genomes]
rs73873633	1.00[AMR][1000 genomes]
rs73873646	1.00[AMR][1000 genomes]
rs73873649	1.00[AMR][1000 genomes]
rs73873651	1.00[AMR][1000 genomes]
rs73873652	1.00[AMR][1000 genomes]
rs73873653	1.00[AMR][1000 genomes]
rs73873658	1.00[AMR][1000 genomes]
rs73873660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873668	1.00[AMR][1000 genomes]
rs73873671	1.00[AMR][1000 genomes]
rs73873674	1.00[AMR][1000 genomes]
rs73873677	1.00[AMR][1000 genomes]
rs73873679	1.00[AMR][1000 genomes]
rs73873799	1.00[AMR][1000 genomes]
rs73873801	1.00[AMR][1000 genomes]
rs73873802	1.00[AMR][1000 genomes]
rs73878004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157083600-157105800	Weak transcription	HSMM	muscle
3	chr3:157088000-157108600	Weak transcription	Lung	lung
4	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
7	chr3:157094200-157106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:157094200-157106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:157094200-157106200	Weak transcription	NH-A	brain
10	chr3:157095000-157105200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:157095000-157105400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157095200-157106600	Weak transcription	Osteobl	bone
13	chr3:157098200-157105200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:157099200-157102200	Weak transcription	HUVEC	blood vessel
15	chr3:157100200-157102400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:157100200-157105200	Weak transcription	NHDF-Ad	bronchial
17	chr3:157101000-157103800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:157101000-157104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:157101200-157102200	Enhancers	Fetal Brain Male	brain
20	chr3:157101400-157102600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:157101400-157103000	Enhancers	Fetal Lung	lung
22	chr3:157101600-157102800	Enhancers	Fetal Brain Female	brain
23	chr3:157101800-157103000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:157102000-157102600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:157102000-157102600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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