Variant report

Variant	rs73873658
Chromosome Location	chr3:157094119-157094120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs58287058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58892422	1.00[AMR][1000 genomes]
rs59252849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59359862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873603	1.00[AMR][1000 genomes]
rs73873610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873660	1.00[AMR][1000 genomes]
rs73873665	1.00[AMR][1000 genomes]
rs73873668	1.00[AMR][1000 genomes]
rs73873671	1.00[AMR][1000 genomes]
rs73873674	1.00[AMR][1000 genomes]
rs73873677	1.00[AMR][1000 genomes]
rs73873679	1.00[AMR][1000 genomes]
rs73873799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73878004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157083600-157105800	Weak transcription	HSMM	muscle
3	chr3:157088000-157108600	Weak transcription	Lung	lung
4	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:157090200-157096800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:157091200-157095200	Enhancers	NHDF-Ad	bronchial
7	chr3:157091400-157095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:157091400-157095000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157091400-157096000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:157091600-157094200	Enhancers	NH-A	brain
11	chr3:157091600-157095000	Enhancers	NHLF	lung
12	chr3:157091600-157097200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
15	chr3:157092000-157096000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:157092800-157094200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:157092800-157095000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:157092800-157095000	Enhancers	HUVEC	blood vessel
19	chr3:157093000-157094200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:157093200-157094600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:157093200-157094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:157093200-157095200	Enhancers	Osteobl	bone
23	chr3:157093400-157094200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:157093600-157095000	Enhancers	Fetal Brain Male	brain
25	chr3:157093600-157095000	Enhancers	Fetal Lung	lung
26	chr3:157093600-157095200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:157093800-157094200	Enhancers	Fetal Muscle Leg	muscle
28	chr3:157093800-157094600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:157093800-157095200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:157093800-157095400	Enhancers	Fetal Stomach	stomach
31	chr3:157094000-157094600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr3:157094000-157094800	Enhancers	Brain Germinal Matrix	brain
33	chr3:157094000-157094800	Enhancers	Fetal Brain Female	brain
34	chr3:157094000-157095000	Enhancers	Brain Hippocampus Middle	brain

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