Variant report

Variant	rs60917457
Chromosome Location	chr3:50878440-50878441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12485524	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12486828	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12487821	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12488831	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12488948	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12490502	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12490519	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12491206	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12491402	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12492367	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12492850	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12494214	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12494708	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12494776	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12495399	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12496601	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12496621	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12497067	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17051403	0.82[AFR][1000 genomes]
rs17051468	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2035484	0.82[AFR][1000 genomes]
rs2125368	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2262847	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2355707	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4073739	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4078296	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4688695	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4688696	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4688697	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4688752	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56844171	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58356214	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58720544	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60184902	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60552386	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60602904	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60882641	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61557316	0.85[ASN][1000 genomes]
rs61627377	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61676409	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6446239	0.89[ASN][1000 genomes]
rs72937251	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72937253	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72937262	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72937265	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72937299	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72939228	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72942530	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72942567	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72944730	0.81[AFR][1000 genomes]
rs7372342	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7427526	0.91[ASN][1000 genomes]
rs7427615	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50874200-50878600	Weak transcription	Brain Anterior Caudate	brain
2	chr3:50874200-50878800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:50876600-50878600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:50876600-50880200	Weak transcription	Brain Substantia Nigra	brain
5	chr3:50876800-50878600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:50876800-50878600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:50877800-50879000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:50878000-50879000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:50878400-50879000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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