Variant report

Variant	rs12496601
Chromosome Location	chr3:50820117-50820118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:73141458..73143069-chr3:50817283..50820282,2	K562	blood:

Variant related genes	Relation type
ENSG00000263786	Chromatin interaction
ENSG00000189159	Chromatin interaction
ENSG00000252042	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1077215	0.81[ASN][1000 genomes]
rs12485524	0.85[ASN][1000 genomes]
rs12486717	0.81[ASN][1000 genomes]
rs12486828	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12487821	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12488831	0.89[ASN][1000 genomes]
rs12488948	0.89[ASN][1000 genomes]
rs12490519	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12491402	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12492367	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12492850	0.89[ASN][1000 genomes]
rs12492982	0.82[AFR][1000 genomes]
rs12494708	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12494776	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12495399	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497067	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17051403	0.82[AFR][1000 genomes]
rs17051468	0.91[ASN][1000 genomes]
rs2125368	0.92[ASN][1000 genomes]
rs2262847	0.92[ASN][1000 genomes]
rs2355707	0.88[ASN][1000 genomes]
rs4078296	0.89[ASN][1000 genomes]
rs4688695	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688696	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688697	0.89[ASN][1000 genomes]
rs4688752	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56844171	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56856095	0.82[ASN][1000 genomes]
rs58356214	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58720544	0.85[ASN][1000 genomes]
rs59036236	0.81[ASN][1000 genomes]
rs60184902	0.83[ASN][1000 genomes]
rs60552386	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60602904	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60882641	0.86[ASN][1000 genomes]
rs60917457	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61557316	0.93[ASN][1000 genomes]
rs61627377	0.88[ASN][1000 genomes]
rs61676409	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6446239	0.85[ASN][1000 genomes]
rs6794155	0.81[ASN][1000 genomes]
rs72937251	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72937253	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72937262	0.88[ASN][1000 genomes]
rs72937265	0.88[ASN][1000 genomes]
rs72937299	0.85[ASN][1000 genomes]
rs72942530	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72942567	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72942794	0.81[ASN][1000 genomes]
rs7372342	0.86[ASN][1000 genomes]
rs7427526	0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50814800-50821400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:50816400-50820400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:50818000-50824200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:50819400-50825200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:50819400-50825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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