Variant report

Variant	rs60552386
Chromosome Location	chr3:50783365-50783366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1077215	0.85[ASN][1000 genomes]
rs12485524	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12486717	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12486828	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12487821	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488831	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12488948	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12489607	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12490519	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12491402	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12491440	0.82[ASN][1000 genomes]
rs12492093	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12492367	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492540	0.82[ASN][1000 genomes]
rs12492850	0.85[ASN][1000 genomes]
rs12492982	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12494708	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12494776	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12495399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12496601	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12497067	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17051043	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17051045	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17051403	0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17051468	0.86[ASN][1000 genomes]
rs2035484	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2076927	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2125368	0.88[ASN][1000 genomes]
rs2170840	0.82[ASN][1000 genomes]
rs2262847	0.88[ASN][1000 genomes]
rs2355707	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4078296	0.85[ASN][1000 genomes]
rs4688695	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4688696	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4688697	0.85[ASN][1000 genomes]
rs4688705	0.82[ASN][1000 genomes]
rs4688752	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56844171	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56856095	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57910827	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58356214	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58529408	0.84[ASN][1000 genomes]
rs58720544	0.80[ASN][1000 genomes]
rs59036236	0.85[ASN][1000 genomes]
rs60602904	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60877431	0.82[AFR][1000 genomes]
rs60882641	0.82[ASN][1000 genomes]
rs60917457	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61557316	0.94[ASN][1000 genomes]
rs61627377	0.83[ASN][1000 genomes]
rs61676409	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6446208	0.81[ASN][1000 genomes]
rs6446239	0.81[ASN][1000 genomes]
rs6794155	0.85[ASN][1000 genomes]
rs728902	0.82[ASN][1000 genomes]
rs72937251	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72937253	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72937262	0.83[ASN][1000 genomes]
rs72937265	0.83[ASN][1000 genomes]
rs72937299	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72942530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72942567	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72942785	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72942794	0.85[ASN][1000 genomes]
rs72944726	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72944730	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7372342	0.82[ASN][1000 genomes]
rs7427526	0.83[ASN][1000 genomes]
rs876103	0.80[ASN][1000 genomes]
rs876104	0.81[ASN][1000 genomes]
rs876105	0.81[ASN][1000 genomes]
rs9879397	0.82[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50775800-50787400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:50776000-50789000	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:50776000-50790000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:50776800-50785800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:50776800-50785800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:50777000-50785800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:50777400-50786000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:50782800-50783400	ZNF genes & repeats	Fetal Brain Female	brain
9	chr3:50783000-50785600	Weak transcription	Brain Anterior Caudate	brain

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