Variant report

Variant	rs72942567
Chromosome Location	chr3:50839803-50839804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1077215	0.82[ASN][1000 genomes]
rs12485524	0.87[ASN][1000 genomes]
rs12486717	0.82[ASN][1000 genomes]
rs12486828	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487821	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12488831	0.91[ASN][1000 genomes]
rs12488948	0.91[ASN][1000 genomes]
rs12490502	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12490519	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491206	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12491402	0.94[ASN][1000 genomes]
rs12492367	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12492850	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12494214	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12494708	0.92[ASN][1000 genomes]
rs12494776	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12495399	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12496601	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12496621	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12497067	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17051403	0.81[ASN][1000 genomes]
rs17051468	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2035484	0.81[ASN][1000 genomes]
rs2076927	0.81[ASN][1000 genomes]
rs2125368	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2262847	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2355707	0.89[ASN][1000 genomes]
rs4073739	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4078296	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4688695	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4688696	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4688697	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4688752	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56844171	0.94[ASN][1000 genomes]
rs56856095	0.83[ASN][1000 genomes]
rs58356214	0.94[ASN][1000 genomes]
rs58529408	0.81[ASN][1000 genomes]
rs58720544	0.86[ASN][1000 genomes]
rs59036236	0.82[ASN][1000 genomes]
rs60184902	0.85[ASN][1000 genomes]
rs60552386	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60602904	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60882641	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs60917457	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61557316	0.91[ASN][1000 genomes]
rs61627377	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61676409	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6446239	0.87[ASN][1000 genomes]
rs6794155	0.82[ASN][1000 genomes]
rs72937251	0.88[ASN][1000 genomes]
rs72937253	0.88[ASN][1000 genomes]
rs72937262	0.89[ASN][1000 genomes]
rs72937265	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72937299	0.86[ASN][1000 genomes]
rs72939228	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72942530	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72942794	0.82[ASN][1000 genomes]
rs72944726	0.81[ASN][1000 genomes]
rs72944730	0.81[ASN][1000 genomes]
rs7372342	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7427526	0.89[ASN][1000 genomes]
rs7427615	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3376460	chr3:50839676-50839844	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50826400-50841200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:50838800-50840600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:50839600-50840200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:50839800-50840400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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