Variant report

Variant	rs4688695
Chromosome Location	chr3:50827848-50827849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1077215	0.81[ASN][1000 genomes]
rs12485524	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12486717	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12486828	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12487821	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12488831	0.89[ASN][1000 genomes]
rs12488948	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12490519	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12491402	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12491440	0.82[AFR][1000 genomes]
rs12492367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12492540	0.83[AFR][1000 genomes]
rs12492850	0.89[ASN][1000 genomes]
rs12494708	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12494776	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12495399	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12496601	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497067	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17051403	0.85[AFR][1000 genomes]
rs17051468	0.91[ASN][1000 genomes]
rs2035484	0.82[AFR][1000 genomes]
rs2125368	0.92[ASN][1000 genomes]
rs2262847	0.92[ASN][1000 genomes]
rs2355707	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4078296	0.89[ASN][1000 genomes]
rs4688696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688697	0.89[ASN][1000 genomes]
rs4688752	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56844171	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56856095	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58356214	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58720544	0.85[ASN][1000 genomes]
rs59036236	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs60184902	0.83[ASN][1000 genomes]
rs60552386	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60602904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60882641	0.86[ASN][1000 genomes]
rs60917457	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61557316	0.93[ASN][1000 genomes]
rs61627377	0.88[ASN][1000 genomes]
rs61676409	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6446239	0.85[ASN][1000 genomes]
rs6794155	0.81[ASN][1000 genomes]
rs728902	0.83[AFR][1000 genomes]
rs72937251	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72937253	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72937262	0.88[ASN][1000 genomes]
rs72937265	0.88[ASN][1000 genomes]
rs72937299	0.85[ASN][1000 genomes]
rs72942530	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72942567	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72942794	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72944730	0.81[AFR][1000 genomes]
rs7372342	0.86[ASN][1000 genomes]
rs7427526	0.88[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50824400-50829600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:50826200-50829800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:50826400-50834400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:50826400-50841200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:50827000-50830400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:50827200-50828200	Enhancers	Brain Hippocampus Middle	brain
7	chr3:50827400-50828000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:50827400-50828200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:50827400-50828400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:50827400-50828800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:50827400-50830200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:50827600-50828000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:50827600-50828600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:50827600-50828600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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