Variant report

Variant	rs12490519
Chromosome Location	chr3:50845399-50845400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1077215	0.82[ASN][1000 genomes]
rs12485524	0.87[ASN][1000 genomes]
rs12486717	0.82[ASN][1000 genomes]
rs12486828	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487821	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12488831	0.91[ASN][1000 genomes]
rs12488948	0.91[ASN][1000 genomes]
rs12490502	0.89[EUR][1000 genomes]
rs12491206	0.89[EUR][1000 genomes]
rs12491402	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12492367	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12492850	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12494214	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12494708	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12494776	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12495399	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12496601	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12496621	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12497067	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17051403	0.81[ASN][1000 genomes]
rs17051468	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2035484	0.81[ASN][1000 genomes]
rs2076927	0.81[ASN][1000 genomes]
rs2125368	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2262847	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2355707	0.89[ASN][1000 genomes]
rs4073739	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4078296	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4688695	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4688696	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4688697	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4688752	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56844171	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56856095	0.83[ASN][1000 genomes]
rs58356214	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58529408	0.81[ASN][1000 genomes]
rs58720544	0.86[ASN][1000 genomes]
rs59036236	0.82[ASN][1000 genomes]
rs60184902	0.85[ASN][1000 genomes]
rs60552386	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60602904	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60882641	0.88[ASN][1000 genomes]
rs60917457	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61557316	0.91[ASN][1000 genomes]
rs61627377	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61676409	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6446239	0.87[ASN][1000 genomes]
rs6794155	0.82[ASN][1000 genomes]
rs72937251	0.88[ASN][1000 genomes]
rs72937253	0.88[ASN][1000 genomes]
rs72937262	0.89[ASN][1000 genomes]
rs72937265	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72937299	0.86[ASN][1000 genomes]
rs72939228	0.89[EUR][1000 genomes]
rs72942530	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72942567	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72942794	0.82[ASN][1000 genomes]
rs72944726	0.81[ASN][1000 genomes]
rs72944730	0.81[ASN][1000 genomes]
rs7372342	0.88[ASN][1000 genomes]
rs7427526	0.89[ASN][1000 genomes]
rs7427615	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50842600-50845400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:50843000-50845400	Enhancers	Placenta	Placenta
3	chr3:50843800-50845400	Enhancers	HSMM	muscle
4	chr3:50844000-50854200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:50844400-50849400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:50844400-50854200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:50844400-50854600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:50844600-50846200	Enhancers	HSMMtube	muscle
9	chr3:50844600-50849400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:50844600-50853000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:50844800-50853200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:50845000-50849400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:50845000-50849400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:50845000-50853000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:50845000-50853000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:50845200-50849400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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