Variant report

Variant	rs56856095
Chromosome Location	chr3:50714581-50714582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1077215	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12486143	0.83[AMR][1000 genomes]
rs12486717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12486828	0.83[ASN][1000 genomes]
rs12487817	0.82[AMR][1000 genomes]
rs12487821	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12489607	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12490519	0.83[ASN][1000 genomes]
rs12491402	0.80[ASN][1000 genomes]
rs12491440	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12491812	0.87[AMR][1000 genomes]
rs12492093	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12492367	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12492540	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12492982	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12494094	0.88[AMR][1000 genomes]
rs12494326	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12494776	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12495399	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12496601	0.82[ASN][1000 genomes]
rs12497067	0.82[ASN][1000 genomes]
rs17050991	0.87[AMR][1000 genomes]
rs17050995	0.83[AMR][1000 genomes]
rs17051000	0.88[AMR][1000 genomes]
rs17051043	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051045	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051403	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1872184	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1894459	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2035484	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2076927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2125368	0.80[ASN][1000 genomes]
rs2170840	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2227292	0.82[ASN][1000 genomes]
rs2227293	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2239750	0.82[ASN][1000 genomes]
rs2239751	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239752	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2239753	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2262847	0.80[ASN][1000 genomes]
rs2285090	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3749265	0.88[AMR][1000 genomes]
rs3752449	0.82[ASN][1000 genomes]
rs3792323	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4476497	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4688695	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4688696	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4688705	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4688707	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4688709	0.82[ASN][1000 genomes]
rs4688710	0.88[AMR][1000 genomes]
rs4688713	0.83[AMR][1000 genomes]
rs4688752	0.80[ASN][1000 genomes]
rs56170012	0.82[AMR][1000 genomes]
rs56844171	0.80[ASN][1000 genomes]
rs57910827	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58356214	0.80[ASN][1000 genomes]
rs58427389	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58529408	0.96[ASN][1000 genomes]
rs59036236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60552073	0.88[AMR][1000 genomes]
rs60552386	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60602904	0.85[ASN][1000 genomes]
rs60877431	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61193866	0.87[AMR][1000 genomes]
rs61316441	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61557316	0.81[ASN][1000 genomes]
rs61574029	0.85[AMR][1000 genomes]
rs61613532	0.85[AMR][1000 genomes]
rs616689	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61676409	0.83[ASN][1000 genomes]
rs6446208	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650655	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6766638	0.82[AMR][1000 genomes]
rs6771348	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6783922	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6794155	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728902	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72938758	0.85[AMR][1000 genomes]
rs72940708	0.83[EUR][1000 genomes]
rs72942530	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72942567	0.83[ASN][1000 genomes]
rs72942785	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72942794	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72944726	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72944730	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73835531	0.83[AMR][1000 genomes]
rs743753	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs745356	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs762889	0.82[ASN][1000 genomes]
rs808148	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs876103	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs876104	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs876105	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9868889	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9879397	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50713200-50715200	Enhancers	HSMM	muscle
2	chr3:50713200-50727600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:50713400-50714600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:50713600-50714800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr3:50713800-50715000	Weak transcription	Brain Substantia Nigra	brain
6	chr3:50714000-50714600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:50714000-50714600	Enhancers	Fetal Brain Male	brain
8	chr3:50714000-50714600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:50714000-50715000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:50714000-50715200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:50714000-50715800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:50714200-50715000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr3:50714400-50714600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:50714400-50714600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr3:50714400-50714600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:50714400-50714600	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr3:50714400-50714600	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:50714400-50714600	Enhancers	Brain Hippocampus Middle	brain
19	chr3:50714400-50714600	Flanking Active TSS	HSMMtube	muscle
20	chr3:50714400-50714800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:50714400-50714800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:50714400-50714800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr3:50714400-50715000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:50714400-50715200	Enhancers	Fetal Brain Female	brain
25	chr3:50714400-50715400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr3:50714400-50721600	Weak transcription	Brain Angular Gyrus	brain

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