Variant report

Variant	rs60987687
Chromosome Location	chr2:74104241-74104242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:74104200-74104350	HEEpiC	esophagus:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74096968..74099878-chr2:74103066..74104591,2	MCF-7	breast:
2	chr2:74103145..74104933-chr2:74212158..74213816,2	K562	blood:

Variant related genes	Relation type
ENSG00000271536	TF binding region
ENSG00000235499	Chromatin interaction
ENSG00000255989	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10167667	1.00[ASN][1000 genomes]
rs10202343	1.00[ASN][1000 genomes]
rs1055888	0.94[ASN][1000 genomes]
rs11126419	0.97[ASN][1000 genomes]
rs11890369	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11892479	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11897051	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105840	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12614068	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12618950	0.91[ASN][1000 genomes]
rs12623504	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13012471	0.88[ASN][1000 genomes]
rs13414927	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418993	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419314	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432600	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009396	0.88[ASN][1000 genomes]
rs17009399	0.88[ASN][1000 genomes]
rs17009404	0.88[ASN][1000 genomes]
rs3738845	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813230	0.85[ASN][1000 genomes]
rs3813231	0.85[ASN][1000 genomes]
rs3813233	0.87[EUR][1000 genomes]
rs56665235	0.88[ASN][1000 genomes]
rs56875063	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58787134	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59974236	0.91[ASN][1000 genomes]
rs61314551	0.91[ASN][1000 genomes]
rs6705766	0.84[EUR][1000 genomes]
rs6714724	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6744169	0.87[EUR][1000 genomes]
rs6747730	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6756768	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72915479	0.88[ASN][1000 genomes]
rs72917405	0.94[ASN][1000 genomes]
rs72917409	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72917413	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72917415	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917417	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917422	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917443	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72917445	0.87[EUR][1000 genomes]
rs7565869	0.87[EUR][1000 genomes]
rs7572565	0.88[ASN][1000 genomes]
rs7579755	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592693	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7600452	0.87[EUR][1000 genomes]
rs7607601	0.87[EUR][1000 genomes]
rs7609273	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs919629	0.91[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
2	chr2:74094200-74104400	Weak transcription	K562	blood
3	chr2:74094200-74104600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:74094400-74104600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:74094800-74104600	Weak transcription	GM12878-XiMat	blood
6	chr2:74097600-74114600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:74098000-74104600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:74100600-74104800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:74103800-74104400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:74104000-74104800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:74104000-74104800	Enhancers	HMEC	breast
12	chr2:74104000-74105000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:74104000-74105000	Enhancers	NHEK	skin
14	chr2:74104000-74105400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr2:74104200-74104400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:74104200-74104400	Enhancers	Fetal Muscle Leg	muscle
17	chr2:74104200-74104600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:74104200-74104600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:74104200-74104600	Flanking Active TSS	Colon Smooth Muscle	Colon
20	chr2:74104200-74104600	Flanking Active TSS	Rectal Smooth Muscle	rectum
21	chr2:74104200-74104600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr2:74104200-74105000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr2:74104200-74105000	Enhancers	HepG2	liver

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