Variant report

Variant	rs72917445
Chromosome Location	chr2:74115782-74115783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr2:74115572-74115820	GM12878	blood:	n/a	n/a
2	ZNF384	chr2:74115573-74115914	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74110164..74112931-chr2:74114874..74116981,2	K562	blood:
2	chr2:74113840..74116714-chr2:74183474..74185515,2	MCF-7	breast:

Variant related genes	Relation type
ACTG2	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11890369	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11892479	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11897051	0.90[EUR][1000 genomes]
rs12105840	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13414927	0.90[EUR][1000 genomes]
rs13418993	0.90[EUR][1000 genomes]
rs13419314	0.90[EUR][1000 genomes]
rs13432600	0.90[EUR][1000 genomes]
rs3738845	0.90[EUR][1000 genomes]
rs3813233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813234	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56875063	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59974236	0.82[ASN][1000 genomes]
rs60987687	0.87[EUR][1000 genomes]
rs61314551	0.82[ASN][1000 genomes]
rs6705766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714724	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6744169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747730	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756768	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72917409	0.90[EUR][1000 genomes]
rs72917413	0.90[EUR][1000 genomes]
rs72917415	0.90[EUR][1000 genomes]
rs72917417	0.90[EUR][1000 genomes]
rs72917422	0.90[EUR][1000 genomes]
rs72917443	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917450	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73948041	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7565869	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7579755	0.90[EUR][1000 genomes]
rs7581248	0.94[ASN][1000 genomes]
rs7600291	1.00[ASN][1000 genomes]
rs7600452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7607601	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74114800-74115800	Enhancers	Hela-S3	cervix
2	chr2:74114800-74118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:74115000-74118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:74115000-74118800	Enhancers	Colon Smooth Muscle	Colon
5	chr2:74115000-74119600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:74115000-74123600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:74115200-74116000	Active TSS	Stomach Smooth Muscle	stomach
8	chr2:74115400-74116200	Enhancers	Dnd41	blood
9	chr2:74115400-74117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:74115400-74117600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links