Variant report

Variant	rs72917417
Chromosome Location	chr2:74098304-74098305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74095488..74097944-chr2:74098084..74100045,2	K562	blood:
2	chr2:74097880..74100787-chr2:74100945..74103812,3	K562	blood:
3	chr2:74096968..74099878-chr2:74103066..74104591,2	MCF-7	breast:
4	chr2:74097431..74099380-chr2:74100945..74102785,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10167667	1.00[ASN][1000 genomes]
rs10202343	1.00[ASN][1000 genomes]
rs1055888	0.94[ASN][1000 genomes]
rs11126419	0.97[ASN][1000 genomes]
rs11890369	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11892479	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11897051	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105840	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12614068	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12618950	0.91[ASN][1000 genomes]
rs12623504	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13012471	0.88[ASN][1000 genomes]
rs13414927	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418993	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419314	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432600	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009396	0.88[ASN][1000 genomes]
rs17009399	0.88[ASN][1000 genomes]
rs17009404	0.88[ASN][1000 genomes]
rs3738845	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813230	0.85[ASN][1000 genomes]
rs3813231	0.85[ASN][1000 genomes]
rs3813233	0.90[EUR][1000 genomes]
rs56665235	0.88[ASN][1000 genomes]
rs56875063	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58787134	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59974236	0.91[ASN][1000 genomes]
rs60987687	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61314551	0.91[ASN][1000 genomes]
rs6705766	0.87[EUR][1000 genomes]
rs6714724	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6744169	0.90[EUR][1000 genomes]
rs6747730	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6756768	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72915479	0.88[ASN][1000 genomes]
rs72917405	0.94[ASN][1000 genomes]
rs72917409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72917413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72917415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917443	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72917445	0.90[EUR][1000 genomes]
rs7565869	0.90[EUR][1000 genomes]
rs7572565	0.88[ASN][1000 genomes]
rs7579755	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592693	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7600452	0.90[EUR][1000 genomes]
rs7607601	0.90[EUR][1000 genomes]
rs7609273	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs919629	0.91[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
2	chr2:74088000-74100400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:74092000-74099400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:74092000-74100800	Weak transcription	Pancreas	Pancrea
5	chr2:74092000-74101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:74092600-74099400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
8	chr2:74093400-74102200	Weak transcription	Psoas Muscle	Psoas
9	chr2:74093800-74099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:74093800-74101800	Weak transcription	HepG2	liver
11	chr2:74094000-74100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:74094000-74102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:74094200-74098800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:74094200-74099200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:74094200-74099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:74094200-74099200	Weak transcription	Liver	Liver
17	chr2:74094200-74100200	Weak transcription	Gastric	stomach
18	chr2:74094200-74100600	Weak transcription	Fetal Kidney	kidney
19	chr2:74094200-74100800	Weak transcription	Brain Anterior Caudate	brain
20	chr2:74094200-74101000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:74094200-74101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:74094200-74101000	Weak transcription	Ovary	ovary
23	chr2:74094200-74101200	Weak transcription	Thymus	Thymus
24	chr2:74094200-74101400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:74094200-74101400	Weak transcription	Lung	lung
26	chr2:74094200-74101600	Weak transcription	Primary B cells from cord blood	blood
27	chr2:74094200-74101600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:74094200-74103400	Weak transcription	Fetal Thymus	thymus
29	chr2:74094200-74104000	Weak transcription	NHEK	skin
30	chr2:74094200-74104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:74094200-74104400	Weak transcription	K562	blood
32	chr2:74094200-74104600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr2:74094400-74099200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:74094400-74100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:74094400-74101000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr2:74094400-74101000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:74094400-74101000	Weak transcription	Dnd41	blood
38	chr2:74094400-74103000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr2:74094400-74103800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr2:74094400-74104000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr2:74094400-74104200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr2:74094400-74104600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr2:74094600-74099200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr2:74094600-74101000	Weak transcription	Fetal Intestine Small	intestine
45	chr2:74094600-74101200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr2:74094800-74104600	Weak transcription	GM12878-XiMat	blood
47	chr2:74096000-74099200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:74097200-74098400	Enhancers	Fetal Muscle Leg	muscle
49	chr2:74097400-74098400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:74097400-74098600	Enhancers	Fetal Stomach	stomach

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