Variant report

Variant	rs7565869
Chromosome Location	chr2:74115177-74115178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:74115128-74115641	Hela-S3	cervix:	n/a	chr2:74115296-74115307
2	CEBPB	chr2:74115167-74115441	H1-hESC	embryonic stem cell:	n/a	chr2:74115296-74115307
3	FOS	chr2:74114689-74115439	MCF10A-Er-Src	breast:	n/a	n/a
4	TEAD4	chr2:74115162-74115464	K562	blood:	n/a	n/a
5	CEBPB	chr2:74114662-74115399	IMR90	lung:	n/a	chr2:74115296-74115307
6	CEBPB	chr2:74115157-74115358	A549	lung:	n/a	chr2:74115296-74115307
7	CEBPB	chr2:74115174-74115455	K562	blood:	n/a	chr2:74115296-74115307
8	FOS	chr2:74114669-74115360	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr2:74115147-74115353	HepG2	liver:	n/a	chr2:74115296-74115307
10	FOS	chr2:74114697-74115449	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr2:74115146-74115404	K562	blood:	n/a	chr2:74115296-74115307

No.	Distal block	Cell Line	Cell type
1	chr2:74110164..74112931-chr2:74114874..74116981,2	K562	blood:
2	chr2:74113840..74116714-chr2:74183474..74185515,2	MCF-7	breast:
3	chr2:74113694..74115588-chr2:74118848..74120492,2	K562	blood:

Variant related genes	Relation type
ACTG2	TF binding region
ENSG00000163017	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11890369	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11892479	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11897051	0.90[EUR][1000 genomes]
rs12105840	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13414927	0.90[EUR][1000 genomes]
rs13418993	0.90[EUR][1000 genomes]
rs13419314	0.90[EUR][1000 genomes]
rs13432600	0.90[EUR][1000 genomes]
rs3738845	0.90[EUR][1000 genomes]
rs3813233	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813234	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56875063	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59974236	0.85[ASN][1000 genomes]
rs60987687	0.87[EUR][1000 genomes]
rs61314551	0.85[ASN][1000 genomes]
rs6705766	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6714724	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6744169	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6747730	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6756768	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72917409	0.90[EUR][1000 genomes]
rs72917413	0.90[EUR][1000 genomes]
rs72917415	0.90[EUR][1000 genomes]
rs72917417	0.90[EUR][1000 genomes]
rs72917422	0.90[EUR][1000 genomes]
rs72917443	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72917445	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72917450	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73948041	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7579755	0.90[EUR][1000 genomes]
rs7581248	0.90[ASN][1000 genomes]
rs7600291	0.97[ASN][1000 genomes]
rs7600452	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7607601	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74114800-74115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:74114800-74115800	Enhancers	Hela-S3	cervix
3	chr2:74114800-74118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:74115000-74115200	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr2:74115000-74118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:74115000-74118800	Enhancers	Colon Smooth Muscle	Colon
7	chr2:74115000-74119600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:74115000-74123600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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