Variant report

Variant	rs6114737
Chromosome Location	chr20:24454499-24454500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56698917	1.00[AMR][1000 genomes]
rs57242312	1.00[AMR][1000 genomes]
rs58411424	1.00[AMR][1000 genomes]
rs58816199	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60071381	1.00[AMR][1000 genomes]
rs6036757	1.00[AMR][1000 genomes]
rs6036761	1.00[AMR][1000 genomes]
rs6036764	1.00[AMR][1000 genomes]
rs6036765	1.00[AMR][1000 genomes]
rs6036795	1.00[AMR][1000 genomes]
rs6036799	1.00[AMR][1000 genomes]
rs6049646	1.00[AMR][1000 genomes]
rs6049649	1.00[AMR][1000 genomes]
rs6049650	1.00[AMR][1000 genomes]
rs6049658	1.00[AMR][1000 genomes]
rs6049661	1.00[AMR][1000 genomes]
rs6049664	1.00[AMR][1000 genomes]
rs6049684	1.00[AMR][1000 genomes]
rs6049685	1.00[AMR][1000 genomes]
rs6106890	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114680	1.00[AMR][1000 genomes]
rs6114742	1.00[AMR][1000 genomes]
rs61327850	1.00[AMR][1000 genomes]
rs61331067	1.00[AMR][1000 genomes]
rs61466179	1.00[AMR][1000 genomes]
rs7267437	1.00[AMR][1000 genomes]
rs73334429	1.00[AMR][1000 genomes]
rs73334458	1.00[AMR][1000 genomes]
rs73334471	1.00[AMR][1000 genomes]
rs73334489	1.00[AMR][1000 genomes]
rs73334499	1.00[AMR][1000 genomes]
rs73336247	1.00[AMR][1000 genomes]
rs73338050	1.00[AMR][1000 genomes]
rs73339909	1.00[AMR][1000 genomes]
rs73339961	1.00[AMR][1000 genomes]
rs73339963	1.00[AMR][1000 genomes]
rs73339986	1.00[AMR][1000 genomes]
rs73341661	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341672	1.00[AMR][1000 genomes]
rs73341695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452200-24454600	Enhancers	Brain Substantia Nigra	brain
2	chr20:24452200-24454600	Enhancers	Fetal Heart	heart
3	chr20:24452400-24455800	Weak transcription	HMEC	breast
4	chr20:24452400-24458400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:24452400-24458600	Weak transcription	Right Atrium	heart
6	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
7	chr20:24452600-24454800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr20:24452600-24459400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:24452600-24459400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:24453200-24454600	Enhancers	Left Ventricle	heart
11	chr20:24453200-24455400	Enhancers	Brain Angular Gyrus	brain
12	chr20:24453400-24455800	Weak transcription	Brain Germinal Matrix	brain
13	chr20:24453600-24454800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr20:24453600-24459000	Weak transcription	Fetal Brain Male	brain
15	chr20:24454000-24454800	Bivalent Enhancer	A549	lung
16	chr20:24454000-24456400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr20:24454200-24454800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr20:24454200-24454800	Enhancers	Brain Hippocampus Middle	brain
19	chr20:24454200-24455400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr20:24454200-24455800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr20:24454400-24455200	Enhancers	Brain Cingulate Gyrus	brain
22	chr20:24454400-24456000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr20:24454400-24456000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr20:24454400-24457600	Weak transcription	Brain Anterior Caudate	brain
25	chr20:24454400-24459000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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