Variant report

Variant	rs7267437
Chromosome Location	chr20:24437170-24437171
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56698917	1.00[AMR][1000 genomes]
rs57242312	1.00[AMR][1000 genomes]
rs58411424	1.00[AMR][1000 genomes]
rs58816199	1.00[AMR][1000 genomes]
rs60071381	1.00[AMR][1000 genomes]
rs6036757	1.00[AMR][1000 genomes]
rs6036761	1.00[AMR][1000 genomes]
rs6036764	1.00[AMR][1000 genomes]
rs6036765	1.00[AMR][1000 genomes]
rs6036795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036799	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6049646	1.00[AMR][1000 genomes]
rs6049649	1.00[AMR][1000 genomes]
rs6049650	1.00[AMR][1000 genomes]
rs6049658	1.00[AMR][1000 genomes]
rs6049661	1.00[AMR][1000 genomes]
rs6049664	1.00[AMR][1000 genomes]
rs6049684	1.00[AMR][1000 genomes]
rs6049685	1.00[AMR][1000 genomes]
rs6106890	1.00[AMR][1000 genomes]
rs6114680	1.00[AMR][1000 genomes]
rs6114737	1.00[AMR][1000 genomes]
rs6114742	1.00[AMR][1000 genomes]
rs61327850	1.00[AMR][1000 genomes]
rs61331067	1.00[AMR][1000 genomes]
rs61466179	1.00[AMR][1000 genomes]
rs73334429	1.00[AMR][1000 genomes]
rs73334458	1.00[AMR][1000 genomes]
rs73334471	1.00[AMR][1000 genomes]
rs73334489	1.00[AMR][1000 genomes]
rs73334499	1.00[AMR][1000 genomes]
rs73336247	1.00[AMR][1000 genomes]
rs73338050	1.00[AMR][1000 genomes]
rs73339909	1.00[AMR][1000 genomes]
rs73339961	1.00[AMR][1000 genomes]
rs73339963	1.00[AMR][1000 genomes]
rs73339986	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341661	1.00[AMR][1000 genomes]
rs73341667	1.00[AMR][1000 genomes]
rs73341672	1.00[AMR][1000 genomes]
rs73341695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24432400-24439200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24432600-24437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24435400-24437600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr20:24436200-24440000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr20:24436200-24442000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:24436400-24437200	Enhancers	Fetal Lung	lung
7	chr20:24436400-24437400	Enhancers	Fetal Kidney	kidney
8	chr20:24436600-24437200	Enhancers	Brain Hippocampus Middle	brain
9	chr20:24436600-24440400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:24436800-24437200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr20:24436800-24439000	Weak transcription	Fetal Brain Male	brain
12	chr20:24436800-24441800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr20:24436800-24442000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr20:24437000-24437200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr20:24437000-24437800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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