Variant report

Variant	rs61466179
Chromosome Location	chr20:24399538-24399539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56698917	1.00[AMR][1000 genomes]
rs57242312	1.00[AMR][1000 genomes]
rs58411424	1.00[AMR][1000 genomes]
rs58816199	1.00[AMR][1000 genomes]
rs60071381	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036761	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036765	1.00[AMR][1000 genomes]
rs6036795	1.00[AMR][1000 genomes]
rs6036799	1.00[AMR][1000 genomes]
rs6049646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6049649	1.00[AMR][1000 genomes]
rs6049650	1.00[AMR][1000 genomes]
rs6049658	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6049661	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6049664	1.00[AMR][1000 genomes]
rs6049684	1.00[AMR][1000 genomes]
rs6049685	1.00[AMR][1000 genomes]
rs6106890	1.00[AMR][1000 genomes]
rs6114680	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114737	1.00[AMR][1000 genomes]
rs6114742	1.00[AMR][1000 genomes]
rs61327850	1.00[AMR][1000 genomes]
rs61331067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7267437	1.00[AMR][1000 genomes]
rs73334429	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334471	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336247	1.00[AMR][1000 genomes]
rs73338050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339909	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339961	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339963	1.00[AMR][1000 genomes]
rs73339986	1.00[AMR][1000 genomes]
rs73341661	1.00[AMR][1000 genomes]
rs73341667	1.00[AMR][1000 genomes]
rs73341672	1.00[AMR][1000 genomes]
rs73341695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24393000-24400000	Weak transcription	Aorta	Aorta
2	chr20:24397600-24400000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24399200-24399800	Weak transcription	Brain Substantia Nigra	brain
4	chr20:24399400-24400000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:24399400-24400200	Enhancers	Brain Anterior Caudate	brain

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