Variant report

Variant	rs73341695
Chromosome Location	chr20:24482868-24482869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C20orf3-3	chr20:24482805-24482981	ENSG00000228539

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56698917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57242312	1.00[AMR][1000 genomes]
rs58411424	1.00[AMR][1000 genomes]
rs58816199	1.00[AMR][1000 genomes]
rs60071381	1.00[AMR][1000 genomes]
rs6036757	1.00[AMR][1000 genomes]
rs6036761	1.00[AMR][1000 genomes]
rs6036764	1.00[AMR][1000 genomes]
rs6036765	1.00[AMR][1000 genomes]
rs6036795	1.00[AMR][1000 genomes]
rs6036799	1.00[AMR][1000 genomes]
rs6049646	1.00[AMR][1000 genomes]
rs6049649	1.00[AMR][1000 genomes]
rs6049650	1.00[AMR][1000 genomes]
rs6049658	1.00[AMR][1000 genomes]
rs6049661	1.00[AMR][1000 genomes]
rs6049664	1.00[AMR][1000 genomes]
rs6049684	1.00[AMR][1000 genomes]
rs6049685	1.00[AMR][1000 genomes]
rs6106890	1.00[AMR][1000 genomes]
rs6114680	1.00[AMR][1000 genomes]
rs6114737	1.00[AMR][1000 genomes]
rs6114742	1.00[AMR][1000 genomes]
rs61327850	1.00[AMR][1000 genomes]
rs61331067	1.00[AMR][1000 genomes]
rs61466179	1.00[AMR][1000 genomes]
rs7267437	1.00[AMR][1000 genomes]
rs73334429	1.00[AMR][1000 genomes]
rs73334458	1.00[AMR][1000 genomes]
rs73334471	1.00[AMR][1000 genomes]
rs73334489	1.00[AMR][1000 genomes]
rs73334499	1.00[AMR][1000 genomes]
rs73336247	1.00[AMR][1000 genomes]
rs73338050	1.00[AMR][1000 genomes]
rs73339909	1.00[AMR][1000 genomes]
rs73339961	1.00[AMR][1000 genomes]
rs73339963	1.00[AMR][1000 genomes]
rs73339986	1.00[AMR][1000 genomes]
rs73341661	1.00[AMR][1000 genomes]
rs73341667	1.00[AMR][1000 genomes]
rs73341672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
2	chr20:24471200-24493600	Weak transcription	Fetal Brain Female	brain
3	chr20:24473600-24483000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr20:24474600-24484800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr20:24475600-24495600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:24477800-24483000	Enhancers	Fetal Heart	heart
7	chr20:24478800-24483800	Weak transcription	Fetal Lung	lung
8	chr20:24479000-24488400	Weak transcription	Fetal Intestine Small	intestine
9	chr20:24480000-24487000	Enhancers	Brain Hippocampus Middle	brain
10	chr20:24480600-24485800	Enhancers	Brain Substantia Nigra	brain
11	chr20:24481400-24487000	Enhancers	Brain Angular Gyrus	brain
12	chr20:24481600-24504200	Weak transcription	Fetal Brain Male	brain
13	chr20:24482000-24483400	Enhancers	Brain Anterior Caudate	brain
14	chr20:24482000-24483400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr20:24482000-24484000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr20:24482000-24484800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr20:24482000-24485800	Enhancers	Brain Cingulate Gyrus	brain
18	chr20:24482000-24488600	Enhancers	Left Ventricle	heart
19	chr20:24482200-24483200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr20:24482400-24483000	Enhancers	Right Atrium	heart
21	chr20:24482400-24483000	Enhancers	Right Ventricle	heart
22	chr20:24482400-24485000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr20:24482600-24483200	Enhancers	Osteobl	bone
24	chr20:24482600-24483400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr20:24482600-24483400	Enhancers	NH-A	brain
26	chr20:24482600-24484200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr20:24482600-24484200	Enhancers	NHLF	lung
28	chr20:24482600-24484600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr20:24482600-24484600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr20:24482600-24484600	Enhancers	NHDF-Ad	bronchial
31	chr20:24482600-24485200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr20:24482800-24483000	Enhancers	Fetal Muscle Trunk	muscle
33	chr20:24482800-24483200	Enhancers	A549	lung
34	chr20:24482800-24484200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr20:24482800-24484600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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