The 2.0 version of rSNPBase

Variant report

Variant rs61154079
Chromosome Location chr10:61631987-61631988
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:61583200-61640600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr10:61608000-61637200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr10:61618000-61632600 Weak transcription Muscle Satellite Cultured Cells --
4 chr10:61618600-61633200 Weak transcription HSMM muscle
5 chr10:61624400-61632000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr10:61624800-61633000 Weak transcription Brain Germinal Matrix brain
7 chr10:61624800-61641000 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr10:61625000-61632000 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr10:61625000-61632000 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr10:61625000-61632600 Weak transcription Ovary ovary
11 chr10:61625000-61638800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr10:61625000-61655400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr10:61625200-61632000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr10:61625200-61639200 Weak transcription Primary hematopoietic stem cells blood
15 chr10:61625800-61632600 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr10:61626000-61632200 Weak transcription NHEK skin
17 chr10:61626000-61632400 Weak transcription Adipose Nuclei Adipose
18 chr10:61626400-61632000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr10:61627000-61632600 Weak transcription Brain Substantia Nigra brain
20 chr10:61628400-61632400 Enhancers Colon Smooth Muscle Colon
21 chr10:61628600-61632800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr10:61628600-61632800 Enhancers K562 blood
23 chr10:61628600-61638600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr10:61628800-61632000 Weak transcription Fetal Muscle Leg muscle
25 chr10:61628800-61632000 Weak transcription Spleen Spleen
26 chr10:61628800-61632600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr10:61628800-61632600 Enhancers Stomach Smooth Muscle stomach
28 chr10:61629000-61632000 Weak transcription H9 Cell Line embryonic stem cell
29 chr10:61629000-61632000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr10:61629000-61632400 Weak transcription Liver Liver
31 chr10:61629000-61633000 Weak transcription Hela-S3 cervix
32 chr10:61629000-61634200 Weak transcription HepG2 liver
33 chr10:61629400-61632000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr10:61629600-61632000 Enhancers Primary T helper cells PMA-I stimulated --
35 chr10:61629600-61632600 Weak transcription Colonic Mucosa Colon
36 chr10:61629800-61632000 Weak transcription Esophagus oesophagus
37 chr10:61629800-61632000 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr10:61629800-61632000 Weak transcription Right Atrium heart
39 chr10:61629800-61632400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
40 chr10:61629800-61635400 Enhancers Brain Hippocampus Middle brain
41 chr10:61630000-61632000 Weak transcription Brain Inferior Temporal Lobe brain
42 chr10:61630000-61632000 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr10:61630000-61647800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr10:61630200-61632000 Weak transcription Right Ventricle heart
45 chr10:61630200-61633400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr10:61630200-61633400 Enhancers Fetal Intestine Large intestine
47 chr10:61630200-61633400 Enhancers Fetal Stomach stomach
48 chr10:61630400-61632000 Weak transcription Brain Cingulate Gyrus brain
49 chr10:61630400-61632400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr10:61630400-61632400 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015