Variant report

Variant	rs2440915
Chromosome Location	chr10:61673772-61673773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61667421..61670860-chr10:61671929..61674509,5	K562	blood:
2	chr10:61665455..61668408-chr10:61673021..61675966,3	MCF-7	breast:
3	chr10:61673264..61674255-chr10:61684285..61684974,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10994098	1.00[ASN][1000 genomes]
rs10994101	1.00[ASN][1000 genomes]
rs10994103	1.00[ASN][1000 genomes]
rs1149662	1.00[CEU][hapmap]
rs11592958	1.00[ASN][1000 genomes]
rs1171838	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171840	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171842	1.00[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171852	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1177707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1182996	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs1183348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1183349	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1185329	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247565	1.00[ASN][1000 genomes]
rs1631669	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684909	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684910	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684915	1.00[ASN][1000 genomes]
rs1684923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440919	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2450451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450452	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34568290	1.00[ASN][1000 genomes]
rs3862858	1.00[ASN][1000 genomes]
rs41347048	1.00[CEU][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs55668813	1.00[ASN][1000 genomes]
rs56783612	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61101067	1.00[ASN][1000 genomes]
rs61154079	1.00[ASN][1000 genomes]
rs7068392	0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs7077069	1.00[ASN][1000 genomes]
rs7078037	1.00[ASN][1000 genomes]
rs7090532	1.00[ASN][1000 genomes]
rs7095688	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097761	1.00[ASN][1000 genomes]
rs7098890	1.00[ASN][1000 genomes]
rs72816442	1.00[ASN][1000 genomes]
rs72816445	1.00[ASN][1000 genomes]
rs72816451	1.00[ASN][1000 genomes]
rs72816455	1.00[ASN][1000 genomes]
rs72816463	1.00[ASN][1000 genomes]
rs72816467	1.00[ASN][1000 genomes]
rs72816468	1.00[ASN][1000 genomes]
rs72816473	1.00[ASN][1000 genomes]
rs72816475	1.00[ASN][1000 genomes]
rs72816476	1.00[ASN][1000 genomes]
rs72816478	1.00[ASN][1000 genomes]
rs72816480	1.00[ASN][1000 genomes]
rs72816484	1.00[ASN][1000 genomes]
rs72818468	1.00[ASN][1000 genomes]
rs73267491	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73267493	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269307	1.00[ASN][1000 genomes]
rs73269313	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269315	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74155206	1.00[ASN][1000 genomes]
rs74155209	1.00[ASN][1000 genomes]
rs74155210	1.00[ASN][1000 genomes]
rs7894317	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7894427	0.81[ASW][hapmap];0.82[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917800	1.00[ASN][1000 genomes]
rs8677	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2440915	AEBP1	trans	lymphoblastoid	seeQTL
rs2440915	C4orf22	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61669000-61673800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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