Variant report

Variant	rs1171842
Chromosome Location	chr10:61714182-61714183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61665570..61668112-chr10:61711557..61714802,3	MCF-7	breast:
2	chr10:61713846..61716701-chr10:61717990..61720537,3	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction
ENSG00000235931	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10994098	1.00[ASN][1000 genomes]
rs10994101	1.00[ASN][1000 genomes]
rs10994103	1.00[ASN][1000 genomes]
rs10994207	1.00[ASN][1000 genomes]
rs1149662	1.00[CEU][hapmap]
rs11592958	1.00[ASN][1000 genomes]
rs11593303	1.00[ASN][1000 genomes]
rs11597608	1.00[ASN][1000 genomes]
rs11599447	1.00[ASN][1000 genomes]
rs1171838	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171839	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171840	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171852	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1177707	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1182996	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs1183348	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1183349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1185329	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247565	1.00[ASN][1000 genomes]
rs1631669	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664264	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664266	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664267	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664271	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684909	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684910	1.00[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684911	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684912	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684915	1.00[ASN][1000 genomes]
rs1684923	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684924	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440915	1.00[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450451	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450452	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34568290	1.00[ASN][1000 genomes]
rs3862858	1.00[ASN][1000 genomes]
rs41347048	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs55668813	1.00[ASN][1000 genomes]
rs56783612	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61101067	1.00[ASN][1000 genomes]
rs61154079	1.00[ASN][1000 genomes]
rs7068392	1.00[ASN][1000 genomes]
rs7077069	1.00[ASN][1000 genomes]
rs7078037	1.00[ASN][1000 genomes]
rs7090532	1.00[ASN][1000 genomes]
rs7095688	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097761	1.00[ASN][1000 genomes]
rs7098890	1.00[ASN][1000 genomes]
rs72816442	1.00[ASN][1000 genomes]
rs72816445	1.00[ASN][1000 genomes]
rs72816451	1.00[ASN][1000 genomes]
rs72816455	1.00[ASN][1000 genomes]
rs72816463	1.00[ASN][1000 genomes]
rs72816467	1.00[ASN][1000 genomes]
rs72816468	1.00[ASN][1000 genomes]
rs72816473	1.00[ASN][1000 genomes]
rs72816475	1.00[ASN][1000 genomes]
rs72816476	1.00[ASN][1000 genomes]
rs72816478	1.00[ASN][1000 genomes]
rs72816480	1.00[ASN][1000 genomes]
rs72816484	1.00[ASN][1000 genomes]
rs72818468	1.00[ASN][1000 genomes]
rs73267491	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73267493	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269307	1.00[ASN][1000 genomes]
rs73269313	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269315	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74155206	1.00[ASN][1000 genomes]
rs74155209	1.00[ASN][1000 genomes]
rs74155210	1.00[ASN][1000 genomes]
rs7894317	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7894427	0.82[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917800	1.00[ASN][1000 genomes]
rs8677	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1171842	C4orf22	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61713800-61714600	Enhancers	Muscle Satellite Cultured Cells	--

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