Variant report

Variant	rs1684911
Chromosome Location	chr10:61686583-61686584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61680015..61681783-chr10:61685162..61686699,2	MCF-7	breast:
2	chr10:61665644..61668376-chr10:61685930..61687713,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10994098	1.00[ASN][1000 genomes]
rs10994101	1.00[ASN][1000 genomes]
rs10994103	1.00[ASN][1000 genomes]
rs10994207	1.00[ASN][1000 genomes]
rs11592958	1.00[ASN][1000 genomes]
rs11593303	1.00[ASN][1000 genomes]
rs11597608	1.00[ASN][1000 genomes]
rs11599447	1.00[ASN][1000 genomes]
rs1171838	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171839	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171842	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171852	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1177707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1183348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1183349	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1185329	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247565	1.00[ASN][1000 genomes]
rs1631669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664267	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684915	1.00[ASN][1000 genomes]
rs1684923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440915	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440919	0.97[AFR][1000 genomes]
rs2450451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34568290	1.00[ASN][1000 genomes]
rs3862858	1.00[ASN][1000 genomes]
rs41347048	1.00[ASN][1000 genomes]
rs55668813	1.00[ASN][1000 genomes]
rs56783612	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61101067	1.00[ASN][1000 genomes]
rs61154079	1.00[ASN][1000 genomes]
rs7068392	1.00[ASN][1000 genomes]
rs7077069	1.00[ASN][1000 genomes]
rs7078037	1.00[ASN][1000 genomes]
rs7090532	1.00[ASN][1000 genomes]
rs7095688	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097761	1.00[ASN][1000 genomes]
rs7098890	1.00[ASN][1000 genomes]
rs72816442	1.00[ASN][1000 genomes]
rs72816445	1.00[ASN][1000 genomes]
rs72816451	1.00[ASN][1000 genomes]
rs72816455	1.00[ASN][1000 genomes]
rs72816463	1.00[ASN][1000 genomes]
rs72816467	1.00[ASN][1000 genomes]
rs72816468	1.00[ASN][1000 genomes]
rs72816473	1.00[ASN][1000 genomes]
rs72816475	1.00[ASN][1000 genomes]
rs72816476	1.00[ASN][1000 genomes]
rs72816478	1.00[ASN][1000 genomes]
rs72816480	1.00[ASN][1000 genomes]
rs72816484	1.00[ASN][1000 genomes]
rs72818468	1.00[ASN][1000 genomes]
rs73267491	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73267493	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269307	1.00[ASN][1000 genomes]
rs73269313	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269315	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74155206	1.00[ASN][1000 genomes]
rs74155209	1.00[ASN][1000 genomes]
rs74155210	1.00[ASN][1000 genomes]
rs7894317	1.00[ASN][1000 genomes]
rs7894427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917800	1.00[ASN][1000 genomes]
rs8677	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links