Variant report
| Variant | rs1684915 |
|---|---|
| Chromosome Location | chr10:61692772-61692773 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:61664522..61667301-chr10:61690814..61693873,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000108091 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:81)
| rs_ID | r2[population] |
|---|---|
| rs10994098 | 1.00[ASN][1000 genomes] |
| rs10994101 | 1.00[ASN][1000 genomes] |
| rs10994103 | 1.00[ASN][1000 genomes] |
| rs10994207 | 1.00[ASN][1000 genomes] |
| rs11592958 | 1.00[ASN][1000 genomes] |
| rs11593303 | 1.00[ASN][1000 genomes] |
| rs11597608 | 1.00[ASN][1000 genomes] |
| rs11599447 | 1.00[ASN][1000 genomes] |
| rs1171838 | 1.00[ASN][1000 genomes] |
| rs1171839 | 1.00[ASN][1000 genomes] |
| rs1171840 | 1.00[ASN][1000 genomes] |
| rs1171841 | 0.83[AFR][1000 genomes] |
| rs1171842 | 1.00[ASN][1000 genomes] |
| rs1171846 | 0.95[AFR][1000 genomes] |
| rs1171851 | 0.80[AFR][1000 genomes] |
| rs1171852 | 1.00[ASN][1000 genomes] |
| rs1177707 | 1.00[ASN][1000 genomes] |
| rs1177708 | 0.97[AFR][1000 genomes] |
| rs1183348 | 1.00[ASN][1000 genomes] |
| rs1183349 | 1.00[ASN][1000 genomes] |
| rs1185329 | 1.00[ASN][1000 genomes] |
| rs1185330 | 0.92[AFR][1000 genomes] |
| rs12247565 | 1.00[ASN][1000 genomes] |
| rs1631669 | 1.00[ASN][1000 genomes] |
| rs1664264 | 1.00[ASN][1000 genomes] |
| rs1664266 | 1.00[ASN][1000 genomes] |
| rs1664267 | 1.00[ASN][1000 genomes] |
| rs1664271 | 1.00[ASN][1000 genomes] |
| rs1684908 | 0.90[AMR][1000 genomes] |
| rs1684909 | 1.00[ASN][1000 genomes] |
| rs1684910 | 1.00[ASN][1000 genomes] |
| rs1684911 | 1.00[ASN][1000 genomes] |
| rs1684912 | 1.00[ASN][1000 genomes] |
| rs1684923 | 1.00[ASN][1000 genomes] |
| rs1684924 | 1.00[ASN][1000 genomes] |
| rs2440915 | 1.00[ASN][1000 genomes] |
| rs2440917 | 0.97[AFR][1000 genomes] |
| rs2440919 | 1.00[AMR][1000 genomes] |
| rs2450451 | 1.00[ASN][1000 genomes] |
| rs2450452 | 1.00[ASN][1000 genomes] |
| rs2450461 | 0.90[AFR][1000 genomes] |
| rs34568290 | 1.00[ASN][1000 genomes] |
| rs3862858 | 1.00[ASN][1000 genomes] |
| rs41347048 | 1.00[ASN][1000 genomes] |
| rs55668813 | 1.00[ASN][1000 genomes] |
| rs56783612 | 1.00[ASN][1000 genomes] |
| rs61101067 | 1.00[ASN][1000 genomes] |
| rs61154079 | 1.00[ASN][1000 genomes] |
| rs7068392 | 1.00[ASN][1000 genomes] |
| rs7077069 | 1.00[ASN][1000 genomes] |
| rs7078037 | 1.00[ASN][1000 genomes] |
| rs7090532 | 1.00[ASN][1000 genomes] |
| rs7095688 | 1.00[ASN][1000 genomes] |
| rs7097761 | 1.00[ASN][1000 genomes] |
| rs7098890 | 1.00[ASN][1000 genomes] |
| rs72816442 | 1.00[ASN][1000 genomes] |
| rs72816445 | 1.00[ASN][1000 genomes] |
| rs72816451 | 1.00[ASN][1000 genomes] |
| rs72816455 | 1.00[ASN][1000 genomes] |
| rs72816463 | 1.00[ASN][1000 genomes] |
| rs72816467 | 1.00[ASN][1000 genomes] |
| rs72816468 | 1.00[ASN][1000 genomes] |
| rs72816473 | 1.00[ASN][1000 genomes] |
| rs72816475 | 1.00[ASN][1000 genomes] |
| rs72816476 | 1.00[ASN][1000 genomes] |
| rs72816478 | 1.00[ASN][1000 genomes] |
| rs72816480 | 1.00[ASN][1000 genomes] |
| rs72816484 | 1.00[ASN][1000 genomes] |
| rs72818468 | 1.00[ASN][1000 genomes] |
| rs73267491 | 1.00[ASN][1000 genomes] |
| rs73267493 | 1.00[ASN][1000 genomes] |
| rs73269307 | 1.00[ASN][1000 genomes] |
| rs73269313 | 1.00[ASN][1000 genomes] |
| rs73269315 | 1.00[ASN][1000 genomes] |
| rs74155206 | 1.00[ASN][1000 genomes] |
| rs74155209 | 1.00[ASN][1000 genomes] |
| rs74155210 | 1.00[ASN][1000 genomes] |
| rs7894317 | 1.00[ASN][1000 genomes] |
| rs7894427 | 1.00[ASN][1000 genomes] |
| rs7917800 | 1.00[ASN][1000 genomes] |
| rs8677 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1800316 | chr10:61639599-61700473 | Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
