Variant report

Variant	rs72816467
Chromosome Location	chr10:61769336-61769337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61762544..61765366-chr10:61765788..61769845,3	MCF-7	breast:
2	chr10:61765958..61769488-chr10:61774475..61777377,3	K562	blood:
3	chr10:61665954..61668012-chr10:61768858..61771211,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10994098	1.00[ASN][1000 genomes]
rs10994101	1.00[ASN][1000 genomes]
rs10994103	1.00[ASN][1000 genomes]
rs10994207	1.00[ASN][1000 genomes]
rs11592958	1.00[ASN][1000 genomes]
rs11593303	1.00[ASN][1000 genomes]
rs11597608	1.00[ASN][1000 genomes]
rs11599447	1.00[ASN][1000 genomes]
rs1171838	1.00[ASN][1000 genomes]
rs1171839	1.00[ASN][1000 genomes]
rs1171840	1.00[ASN][1000 genomes]
rs1171842	1.00[ASN][1000 genomes]
rs1171852	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1177707	1.00[ASN][1000 genomes]
rs1183348	1.00[ASN][1000 genomes]
rs1183349	1.00[ASN][1000 genomes]
rs1185329	1.00[ASN][1000 genomes]
rs12247565	1.00[ASN][1000 genomes]
rs1631669	1.00[ASN][1000 genomes]
rs1664264	1.00[ASN][1000 genomes]
rs1664266	1.00[ASN][1000 genomes]
rs1664267	1.00[ASN][1000 genomes]
rs1664271	1.00[ASN][1000 genomes]
rs1684909	1.00[ASN][1000 genomes]
rs1684910	1.00[ASN][1000 genomes]
rs1684911	1.00[ASN][1000 genomes]
rs1684912	1.00[ASN][1000 genomes]
rs1684915	1.00[ASN][1000 genomes]
rs1684923	1.00[ASN][1000 genomes]
rs1684924	1.00[ASN][1000 genomes]
rs2440915	1.00[ASN][1000 genomes]
rs2450451	1.00[ASN][1000 genomes]
rs2450452	1.00[ASN][1000 genomes]
rs34568290	1.00[ASN][1000 genomes]
rs3862858	1.00[ASN][1000 genomes]
rs41347048	1.00[ASN][1000 genomes]
rs55668813	1.00[ASN][1000 genomes]
rs56783612	1.00[ASN][1000 genomes]
rs61101067	1.00[ASN][1000 genomes]
rs61154079	1.00[ASN][1000 genomes]
rs7068392	1.00[ASN][1000 genomes]
rs7077069	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078037	1.00[ASN][1000 genomes]
rs7090532	1.00[ASN][1000 genomes]
rs7095688	1.00[ASN][1000 genomes]
rs7097761	1.00[ASN][1000 genomes]
rs72816442	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816445	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816451	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816455	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818468	1.00[ASN][1000 genomes]
rs73267491	1.00[ASN][1000 genomes]
rs73267493	1.00[ASN][1000 genomes]
rs73269307	1.00[ASN][1000 genomes]
rs73269313	1.00[ASN][1000 genomes]
rs73269315	1.00[ASN][1000 genomes]
rs74155206	1.00[ASN][1000 genomes]
rs74155209	1.00[ASN][1000 genomes]
rs74155210	1.00[ASN][1000 genomes]
rs7894317	1.00[ASN][1000 genomes]
rs7894427	1.00[ASN][1000 genomes]
rs7917800	1.00[ASN][1000 genomes]
rs8677	1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61758600-61773600	Weak transcription	Aorta	Aorta
2	chr10:61768600-61769600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:61768600-61770400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:61768800-61770000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:61769000-61770200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links