Variant report

Variant	rs61771761
Chromosome Location	chr1:95661696-95661697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95659624..95662077-chr1:95672537..95675333,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs61772228	1.00[AMR][1000 genomes]
rs61772229	1.00[AMR][1000 genomes]
rs61772230	0.91[AMR][1000 genomes]
rs61772231	1.00[AMR][1000 genomes]
rs61772232	1.00[AMR][1000 genomes]
rs61772245	1.00[AMR][1000 genomes]
rs61772246	0.91[AMR][1000 genomes]
rs61772640	1.00[AMR][1000 genomes]
rs61772642	1.00[AMR][1000 genomes]
rs61772659	1.00[AMR][1000 genomes]
rs61773088	0.91[AMR][1000 genomes]
rs61773101	1.00[AMR][1000 genomes]
rs61774264	1.00[AMR][1000 genomes]
rs61774265	1.00[AMR][1000 genomes]
rs61774266	1.00[AMR][1000 genomes]
rs61774267	1.00[AMR][1000 genomes]
rs61774273	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv870669	chr1:95586773-95690269	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95592800-95661800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:95634400-95673200	Weak transcription	Gastric	stomach
3	chr1:95634800-95663800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:95638200-95665000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:95641000-95662800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:95641200-95663400	Weak transcription	A549	lung
7	chr1:95645400-95662000	Weak transcription	Adipose Nuclei	Adipose
8	chr1:95645400-95663400	Weak transcription	Left Ventricle	heart
9	chr1:95650200-95665400	Weak transcription	Brain Anterior Caudate	brain
10	chr1:95650400-95663400	Weak transcription	Fetal Lung	lung
11	chr1:95651200-95663600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:95658000-95664000	Enhancers	Fetal Heart	heart
13	chr1:95661000-95662200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:95661200-95662000	Enhancers	Psoas Muscle	Psoas
15	chr1:95661200-95662000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:95661200-95662200	Enhancers	Stomach Smooth Muscle	stomach
17	chr1:95661200-95663800	Enhancers	HSMMtube	muscle
18	chr1:95661400-95662200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:95661400-95662200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr1:95661400-95662400	Enhancers	Stomach Mucosa	stomach
21	chr1:95661400-95663400	Weak transcription	Pancreas	Pancrea
22	chr1:95661600-95663400	Weak transcription	Liver	Liver
23	chr1:95661600-95664000	Weak transcription	Right Ventricle	heart
24	chr1:95661600-95669600	Weak transcription	K562	blood

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