Variant report

Variant	rs61772231
Chromosome Location	chr1:95552805-95552806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95544414..95547978-chr1:95549348..95553409,4	K562	blood:
2	chr1:95548633..95550280-chr1:95551848..95554407,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs61771761	1.00[AMR][1000 genomes]
rs61772226	1.00[ASN][1000 genomes]
rs61772228	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772229	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772230	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772232	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772245	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772246	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772640	1.00[AMR][1000 genomes]
rs61772642	1.00[AMR][1000 genomes]
rs61772659	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61773088	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61773101	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774264	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774265	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774266	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774267	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774271	1.00[ASN][1000 genomes]
rs61774273	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95549200-95554200	Enhancers	Fetal Heart	heart
2	chr1:95549800-95553000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:95550000-95553000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:95550400-95553000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:95550600-95553000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:95551200-95553000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:95551800-95553200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:95551800-95557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:95552000-95553600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:95552000-95553800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:95552200-95553000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:95552200-95554200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:95552400-95553000	Enhancers	Liver	Liver
14	chr1:95552400-95553000	Flanking Active TSS	K562	blood
15	chr1:95552400-95553600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:95552400-95553600	Enhancers	HSMM	muscle
17	chr1:95552400-95554200	Enhancers	Osteobl	bone
18	chr1:95552400-95556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:95552600-95553000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr1:95552600-95553000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:95552600-95553000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:95552600-95553000	Enhancers	Colon Smooth Muscle	Colon
23	chr1:95552600-95553000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr1:95552600-95553000	Enhancers	Fetal Intestine Large	intestine
25	chr1:95552600-95553000	Enhancers	Fetal Lung	lung
26	chr1:95552600-95553000	Enhancers	Fetal Muscle Leg	muscle
27	chr1:95552600-95553000	Enhancers	Fetal Stomach	stomach
28	chr1:95552600-95553000	Enhancers	Rectal Smooth Muscle	rectum
29	chr1:95552600-95553000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr1:95552600-95553000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:95552600-95553000	Enhancers	Hela-S3	cervix
32	chr1:95552600-95553000	Flanking Active TSS	HepG2	liver
33	chr1:95552600-95553000	Flanking Active TSS	HUVEC	blood vessel
34	chr1:95552600-95553200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:95552600-95553200	Enhancers	HMEC	breast
36	chr1:95552600-95553400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr1:95552600-95553400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:95552600-95553600	Enhancers	Fetal Intestine Small	intestine
39	chr1:95552600-95553600	Enhancers	NHDF-Ad	bronchial
40	chr1:95552600-95554200	Enhancers	Adipose Nuclei	Adipose
41	chr1:95552800-95553000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:95552800-95553000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:95552800-95553000	Enhancers	Stomach Smooth Muscle	stomach
44	chr1:95552800-95553000	Flanking Active TSS	HSMMtube	muscle
45	chr1:95552800-95553200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:95552800-95553200	Active TSS	A549	lung
47	chr1:95552800-95553400	Enhancers	NH-A	brain
48	chr1:95552800-95553400	Enhancers	NHEK	skin
49	chr1:95552800-95553600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr1:95552800-95554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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