Variant report

Variant	rs61772230
Chromosome Location	chr1:95550909-95550910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95549239..95551783-chr1:95557722..95560296,2	K562	blood:
2	chr1:95544414..95547978-chr1:95549348..95553409,4	K562	blood:
3	chr1:95538304..95542687-chr1:95547314..95551412,4	K562	blood:
4	chr1:95549452..95551789-chr1:95607274..95610071,2	K562	blood:
5	chr1:95545358..95548450-chr1:95548611..95551467,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172339	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs61771761	0.91[AMR][1000 genomes]
rs61772226	1.00[ASN][1000 genomes]
rs61772228	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772229	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772231	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772232	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772245	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772246	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772640	0.91[AMR][1000 genomes]
rs61772642	0.91[AMR][1000 genomes]
rs61772659	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61773088	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773101	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774264	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774265	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774266	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774267	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774271	1.00[ASN][1000 genomes]
rs61774273	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95546600-95552000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:95549000-95551200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr1:95549200-95552400	Enhancers	A549	lung
4	chr1:95549200-95554200	Enhancers	Fetal Heart	heart
5	chr1:95549600-95552600	Enhancers	HepG2	liver
6	chr1:95549800-95551200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:95549800-95551200	Enhancers	Psoas Muscle	Psoas
8	chr1:95549800-95552000	Flanking Active TSS	K562	blood
9	chr1:95549800-95553000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:95550000-95551800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:95550000-95553000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:95550200-95551600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:95550200-95552000	Weak transcription	HSMMtube	muscle
14	chr1:95550200-95552200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:95550200-95552400	Weak transcription	HSMM	muscle
16	chr1:95550200-95552600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:95550200-95552600	Weak transcription	Fetal Intestine Large	intestine
18	chr1:95550200-95552600	Weak transcription	Fetal Lung	lung
19	chr1:95550400-95551200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:95550400-95551400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr1:95550400-95551400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:95550400-95551400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:95550400-95551400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr1:95550400-95551800	Weak transcription	HUVEC	blood vessel
25	chr1:95550400-95552400	Weak transcription	NHLF	lung
26	chr1:95550400-95552800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr1:95550400-95553000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr1:95550600-95551000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:95550600-95552200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:95550600-95552400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:95550600-95552400	Weak transcription	Stomach Mucosa	stomach
32	chr1:95550600-95552400	Weak transcription	Osteobl	bone
33	chr1:95550600-95552600	Weak transcription	Fetal Intestine Small	intestine
34	chr1:95550600-95552600	Weak transcription	NHDF-Ad	bronchial
35	chr1:95550600-95552800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr1:95550600-95553000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr1:95550800-95551200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:95550800-95552400	Weak transcription	Liver	Liver

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