The 2.0 version of rSNPBase

Variant report

Variant rs61772642
Chromosome Location chr1:95489060-95489061
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
2 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
3 chr1:95476000-95490800 Weak transcription Primary T cells from cord blood blood
4 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:95480200-95490600 Weak transcription Liver Liver
6 chr1:95480600-95491400 Weak transcription Fetal Intestine Small intestine
7 chr1:95480800-95490800 Weak transcription Left Ventricle heart
8 chr1:95484000-95491000 Weak transcription Psoas Muscle Psoas
9 chr1:95484600-95491000 Weak transcription Thymus Thymus
10 chr1:95484600-95495000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr1:95484800-95489400 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr1:95484800-95490000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:95484800-95491600 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:95484800-95494600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:95485000-95500400 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:95485200-95507000 Weak transcription Fetal Heart heart
17 chr1:95486400-95489600 Enhancers HMEC breast
18 chr1:95486400-95490400 Enhancers Cortex derived primary cultured neurospheres brain
19 chr1:95486600-95489200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:95486600-95494600 Weak transcription HepG2 liver
21 chr1:95487000-95489800 Enhancers HUVEC blood vessel
22 chr1:95487400-95494600 Weak transcription Esophagus oesophagus
23 chr1:95487600-95489400 Weak transcription A549 lung
24 chr1:95487600-95490800 Weak transcription Brain Germinal Matrix brain
25 chr1:95487800-95489600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:95487800-95490200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:95487800-95490200 Enhancers NH-A brain
28 chr1:95487800-95490400 Enhancers Muscle Satellite Cultured Cells --
29 chr1:95487800-95491200 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:95488000-95489200 Enhancers Fetal Lung lung
31 chr1:95488000-95489400 Enhancers Adipose Nuclei Adipose
32 chr1:95488000-95489400 Enhancers Aorta Aorta
33 chr1:95488000-95489600 Enhancers NHDF-Ad bronchial
34 chr1:95488000-95490200 Weak transcription Fetal Muscle Trunk muscle
35 chr1:95488000-95490200 Enhancers NHLF lung
36 chr1:95488000-95490400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:95488000-95490800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
38 chr1:95488000-95507000 Weak transcription Ovary ovary
39 chr1:95488200-95489600 Enhancers Osteobl bone
40 chr1:95488200-95489800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:95488200-95490200 Weak transcription Fetal Muscle Leg muscle
42 chr1:95488200-95490200 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr1:95488200-95490200 Enhancers HSMM muscle
44 chr1:95488200-95490800 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:95488200-95491000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:95488200-95491200 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:95488200-95491400 Weak transcription Fetal Stomach stomach
48 chr1:95488200-95492800 Weak transcription Fetal Brain Male brain
49 chr1:95488200-95499400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:95488200-95505400 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015