Variant report

Variant	rs61774267
Chromosome Location	chr1:95530890-95530891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs61771761	1.00[AMR][1000 genomes]
rs61772226	1.00[ASN][1000 genomes]
rs61772228	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772229	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772230	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772231	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772232	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772245	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772246	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772640	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61772642	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61772659	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773088	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773101	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774264	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774265	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774266	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774271	1.00[ASN][1000 genomes]
rs61774273	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95488200-95537600	Weak transcription	Right Ventricle	heart
2	chr1:95505600-95537400	Weak transcription	Right Atrium	heart
3	chr1:95506000-95537800	Weak transcription	Pancreas	Pancrea
4	chr1:95509400-95532800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:95509400-95534200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:95515600-95535800	Weak transcription	Fetal Lung	lung
7	chr1:95516000-95537200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:95516200-95532600	Weak transcription	Brain Anterior Caudate	brain
9	chr1:95517400-95537800	Weak transcription	Esophagus	oesophagus
10	chr1:95518000-95537000	Weak transcription	Psoas Muscle	Psoas
11	chr1:95518000-95537200	Weak transcription	HSMM	muscle
12	chr1:95521600-95537400	Weak transcription	Brain Germinal Matrix	brain
13	chr1:95523200-95537600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:95523400-95532600	Weak transcription	Brain Angular Gyrus	brain
15	chr1:95523400-95537800	Weak transcription	Left Ventricle	heart
16	chr1:95523600-95531200	Weak transcription	Lung	lung
17	chr1:95523600-95534400	Weak transcription	Small Intestine	intestine
18	chr1:95523600-95537200	Weak transcription	NHLF	lung
19	chr1:95523800-95537200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:95523800-95537200	Weak transcription	HSMMtube	muscle
21	chr1:95523800-95537800	Weak transcription	Fetal Thymus	thymus
22	chr1:95524000-95537200	Weak transcription	NH-A	brain
23	chr1:95524400-95534600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:95524400-95537200	Weak transcription	Osteobl	bone
25	chr1:95524600-95532800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:95524600-95537400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr1:95524600-95537600	Weak transcription	Colonic Mucosa	Colon
28	chr1:95524600-95537600	Weak transcription	Placenta	Placenta
29	chr1:95525000-95537200	Weak transcription	Primary B cells from cord blood	blood
30	chr1:95525000-95537400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:95525200-95537400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:95525800-95537600	Weak transcription	Fetal Brain Male	brain
33	chr1:95526000-95537400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:95526200-95531000	Weak transcription	Fetal Stomach	stomach
35	chr1:95526600-95532600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr1:95526600-95532600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr1:95526600-95537400	Weak transcription	HMEC	breast
38	chr1:95526800-95537200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:95527200-95531600	Weak transcription	HepG2	liver
40	chr1:95527200-95537200	Weak transcription	Fetal Kidney	kidney
41	chr1:95527400-95531800	Weak transcription	GM12878-XiMat	blood
42	chr1:95527400-95534400	Weak transcription	Stomach Mucosa	stomach
43	chr1:95527600-95531000	Weak transcription	Aorta	Aorta
44	chr1:95527800-95531600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr1:95528000-95531200	Strong transcription	Liver	Liver
46	chr1:95528000-95531600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:95528200-95532200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr1:95528200-95537200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:95528200-95537200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:95528200-95537200	Weak transcription	Colon Smooth Muscle	Colon

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