Variant report

Variant	rs61772246
Chromosome Location	chr1:95560994-95560995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs61771761	0.91[AMR][1000 genomes]
rs61772226	1.00[ASN][1000 genomes]
rs61772228	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772229	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772230	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772231	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772232	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772245	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772640	0.91[AMR][1000 genomes]
rs61772642	0.91[AMR][1000 genomes]
rs61772659	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61773088	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61773101	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774264	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774265	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774266	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774267	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774271	1.00[ASN][1000 genomes]
rs61774273	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95554200-95564000	Weak transcription	Osteobl	bone
2	chr1:95558400-95562400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:95559000-95561000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:95559200-95561600	Weak transcription	A549	lung
5	chr1:95560400-95561000	Flanking Active TSS	K562	blood
6	chr1:95560400-95562600	Enhancers	HepG2	liver
7	chr1:95560600-95561400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:95560800-95561400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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