Variant report

Variant	rs61772228
Chromosome Location	chr1:95547662-95547663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs61771761	1.00[AMR][1000 genomes]
rs61772226	1.00[ASN][1000 genomes]
rs61772229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772230	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772231	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772246	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772640	1.00[AMR][1000 genomes]
rs61772642	1.00[AMR][1000 genomes]
rs61772659	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61773088	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773101	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774264	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774265	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774266	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774267	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774271	1.00[ASN][1000 genomes]
rs61774273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95539800-95549000	Weak transcription	K562	blood
2	chr1:95542000-95549600	Weak transcription	HepG2	liver
3	chr1:95546400-95550600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:95546600-95550400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:95546600-95552000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:95546800-95548800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:95546800-95550400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:95546800-95550400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:95546800-95550600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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