Variant report
| Variant | rs61773088 |
|---|---|
| Chromosome Location | chr1:95576736-95576737 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271092 | Chromatin interaction |
| ENSG00000172339 | Chromatin interaction |
| ENSG00000152078 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs61771761 | 0.91[AMR][1000 genomes] |
| rs61772226 | 1.00[ASN][1000 genomes] |
| rs61772228 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772229 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772230 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772231 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772232 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772245 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772246 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61772640 | 0.91[AMR][1000 genomes] |
| rs61772642 | 0.91[AMR][1000 genomes] |
| rs61772659 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61773101 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61774264 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61774265 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61774266 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61774267 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61774271 | 1.00[ASN][1000 genomes] |
| rs61774273 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830636 | chr1:95495849-95703126 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:95576000-95576800 | Enhancers | K562 | blood |
