The 2.0 version of rSNPBase

Variant report

Variant rs62057900
Chromosome Location chr16:69454157-69454158
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:69451800-69457600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr16:69451800-69457600 Weak transcription Pancreas Pancrea
3 chr16:69451800-69457800 Weak transcription Fetal Stomach stomach
4 chr16:69452000-69454400 Enhancers HepG2 liver
5 chr16:69452000-69455600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr16:69452000-69457200 Weak transcription Adipose Nuclei Adipose
7 chr16:69452000-69457600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr16:69452000-69457800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr16:69452000-69458000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr16:69452000-69458000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr16:69452000-69458000 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr16:69452000-69458000 Weak transcription Small Intestine intestine
13 chr16:69452000-69458000 Weak transcription Spleen Spleen
14 chr16:69452000-69458000 Weak transcription HSMMtube muscle
15 chr16:69452000-69458000 Weak transcription NH-A brain
16 chr16:69452000-69458400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr16:69452200-69457000 Weak transcription Placenta Placenta
18 chr16:69452200-69457400 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr16:69452200-69457400 Weak transcription Osteobl bone
20 chr16:69452200-69457600 Weak transcription Ovary ovary
21 chr16:69452200-69458000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr16:69452200-69458000 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr16:69452200-69458000 Weak transcription HUVEC blood vessel
24 chr16:69452400-69457200 Weak transcription Brain Hippocampus Middle brain
25 chr16:69452400-69457600 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr16:69452400-69457600 Weak transcription Stomach Mucosa stomach
27 chr16:69453000-69457400 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr16:69453600-69458000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr16:69453600-69458000 Weak transcription Hela-S3 cervix
30 chr16:69454000-69454400 Weak transcription A549 lung
31 chr16:69454000-69454800 Enhancers Liver Liver

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Last update: Aug 31, 2015