Variant report

Variant	rs11864904
Chromosome Location	chr16:69579786-69579787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69578119..69580388-chr16:69598295..69601086,2	MCF-7	breast:
2	chr16:69574674..69576920-chr16:69578465..69580569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223109	Chromatin interaction
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11863900	1.00[ASN][1000 genomes]
rs1437137	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16958951	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231138	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs45564335	1.00[ASN][1000 genomes]
rs55844704	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043436	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105992	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	1.00[ASN][1000 genomes]
rs56170853	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	1.00[ASN][1000 genomes]
rs56221028	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62057900	1.00[ASN][1000 genomes]
rs6499230	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499238	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs689454	1.00[ASN][1000 genomes]
rs689461	1.00[ASN][1000 genomes]
rs7190756	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7193205	0.83[EUR][1000 genomes]
rs72783105	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	1.00[ASN][1000 genomes]
rs72783117	1.00[ASN][1000 genomes]
rs72783118	1.00[ASN][1000 genomes]
rs72783119	1.00[ASN][1000 genomes]
rs72783121	1.00[ASN][1000 genomes]
rs72783128	1.00[ASN][1000 genomes]
rs72783158	1.00[ASN][1000 genomes]
rs72783160	1.00[ASN][1000 genomes]
rs72783163	1.00[ASN][1000 genomes]
rs72783165	1.00[ASN][1000 genomes]
rs72783174	1.00[ASN][1000 genomes]
rs72799373	1.00[ASN][1000 genomes]
rs72799378	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799379	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799381	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799385	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799386	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799387	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799393	1.00[ASN][1000 genomes]
rs72799394	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801339	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801347	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	1.00[ASN][1000 genomes]
rs72801352	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801354	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	1.00[ASN][1000 genomes]
rs8055148	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1852	chr16:69566121-69610962	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69569800-69579800	Weak transcription	Placenta	Placenta
2	chr16:69574600-69597800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:69577600-69579800	Weak transcription	A549	lung
4	chr16:69579600-69580600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links