Variant report

Variant	rs72783118
Chromosome Location	chr16:69706487-69706488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:69705732-69706517	HepG2	liver:	n/a	n/a
2	GATA3	chr16:69705974-69707068	SK-N-SH	brain:	n/a	chr16:69706767-69706776 chr16:69706769-69706776 chr16:69706764-69706780

Variant related genes	Relation type
NFAT5	TF binding region

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs11863900	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864904	1.00[ASN][1000 genomes]
rs1437137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958951	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231138	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300801	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28444781	1.00[ASN][1000 genomes]
rs45564335	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635123	1.00[ASN][1000 genomes]
rs55844704	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897481	1.00[ASN][1000 genomes]
rs55921818	1.00[ASN][1000 genomes]
rs56000913	1.00[ASN][1000 genomes]
rs56043436	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105992	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170853	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56180453	1.00[ASN][1000 genomes]
rs56186702	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56221028	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369384	1.00[ASN][1000 genomes]
rs58722949	1.00[ASN][1000 genomes]
rs6499230	1.00[ASN][1000 genomes]
rs6499238	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689454	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689461	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190756	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7191376	1.00[ASN][1000 genomes]
rs7193205	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7203292	1.00[ASN][1000 genomes]
rs7204326	1.00[ASN][1000 genomes]
rs72783105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783128	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783158	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783160	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783163	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783165	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783174	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783183	1.00[ASN][1000 genomes]
rs72783184	1.00[ASN][1000 genomes]
rs72783188	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783189	1.00[ASN][1000 genomes]
rs72783195	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783198	1.00[ASN][1000 genomes]
rs72785009	1.00[ASN][1000 genomes]
rs72785012	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72785019	1.00[ASN][1000 genomes]
rs72785020	1.00[ASN][1000 genomes]
rs72785024	1.00[ASN][1000 genomes]
rs72785026	1.00[ASN][1000 genomes]
rs72785029	1.00[ASN][1000 genomes]
rs72785033	1.00[ASN][1000 genomes]
rs72785034	1.00[ASN][1000 genomes]
rs72785037	1.00[ASN][1000 genomes]
rs72785038	1.00[ASN][1000 genomes]
rs72785045	1.00[ASN][1000 genomes]
rs72785047	1.00[ASN][1000 genomes]
rs72785048	1.00[ASN][1000 genomes]
rs72785052	1.00[ASN][1000 genomes]
rs72785055	1.00[ASN][1000 genomes]
rs72785058	1.00[ASN][1000 genomes]
rs72785059	1.00[ASN][1000 genomes]
rs72799373	1.00[ASN][1000 genomes]
rs72799378	1.00[ASN][1000 genomes]
rs72799379	1.00[ASN][1000 genomes]
rs72799381	1.00[ASN][1000 genomes]
rs72799385	1.00[ASN][1000 genomes]
rs72799386	1.00[ASN][1000 genomes]
rs72799387	1.00[ASN][1000 genomes]
rs72799393	1.00[ASN][1000 genomes]
rs72799394	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801339	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801347	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801352	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	1.00[ASN][1000 genomes]
rs8055148	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062809	1.00[ASN][1000 genomes]
rs9935643	1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
2	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
4	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:69681600-69709000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:69681600-69711200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
10	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr16:69690200-69725800	Weak transcription	Ovary	ovary
12	chr16:69690800-69712400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:69691200-69706600	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:69691400-69712400	Weak transcription	Colonic Mucosa	Colon
16	chr16:69694800-69719200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr16:69694800-69725800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr16:69695800-69709200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr16:69697800-69710800	Weak transcription	Lung	lung
20	chr16:69699000-69711800	Weak transcription	Esophagus	oesophagus
21	chr16:69700400-69725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr16:69701400-69707200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:69701400-69707600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:69701400-69707600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr16:69701400-69707800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr16:69701400-69717400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:69701400-69725600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr16:69701600-69707000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr16:69701600-69707400	Strong transcription	Osteobl	bone
30	chr16:69701600-69707600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr16:69701600-69707800	Strong transcription	GM12878-XiMat	blood
32	chr16:69701800-69706800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr16:69701800-69707400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr16:69701800-69708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr16:69701800-69708000	Strong transcription	Placenta	Placenta
36	chr16:69701800-69739200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr16:69702000-69707400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr16:69702000-69707600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:69702000-69707600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr16:69702000-69707600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr16:69702000-69707800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr16:69702200-69716800	Strong transcription	HSMM	muscle
43	chr16:69702400-69707600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr16:69702600-69707600	Strong transcription	Fetal Muscle Leg	muscle
45	chr16:69702600-69707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr16:69702800-69707400	Strong transcription	HMEC	breast
47	chr16:69702800-69707600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr16:69702800-69708000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr16:69703200-69707000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr16:69703200-69707600	Genic enhancers	Fetal Intestine Large	intestine

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