Variant report

Variant	rs56105992
Chromosome Location	chr16:69621959-69621960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69620967..69623720-chr16:69625732..69628226,3	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11863900	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864904	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437137	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958951	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45564335	1.00[ASN][1000 genomes]
rs55844704	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000913	1.00[ASN][1000 genomes]
rs56043436	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170853	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186702	1.00[ASN][1000 genomes]
rs56221028	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62057900	1.00[ASN][1000 genomes]
rs6499230	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499238	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	1.00[ASN][1000 genomes]
rs689454	1.00[ASN][1000 genomes]
rs689461	1.00[ASN][1000 genomes]
rs7190756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7193205	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72783105	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783117	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783118	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783119	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783121	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783128	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783158	1.00[ASN][1000 genomes]
rs72783160	1.00[ASN][1000 genomes]
rs72783163	1.00[ASN][1000 genomes]
rs72783165	1.00[ASN][1000 genomes]
rs72783174	1.00[ASN][1000 genomes]
rs72783183	1.00[ASN][1000 genomes]
rs72783184	1.00[ASN][1000 genomes]
rs72783188	1.00[ASN][1000 genomes]
rs72783189	1.00[ASN][1000 genomes]
rs72783195	1.00[ASN][1000 genomes]
rs72783198	1.00[ASN][1000 genomes]
rs72799373	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799378	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799379	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799381	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799385	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799386	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799387	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799393	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799394	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801339	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801347	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801352	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801354	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055148	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602000-69633000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:69602200-69622000	Weak transcription	Gastric	stomach
3	chr16:69602200-69627000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr16:69602200-69628600	Weak transcription	Right Atrium	heart
5	chr16:69602200-69631600	Weak transcription	Pancreas	Pancrea
6	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
7	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
9	chr16:69602600-69628600	Weak transcription	Thymus	Thymus
10	chr16:69602600-69628800	Weak transcription	Right Ventricle	heart
11	chr16:69602600-69629600	Weak transcription	HSMMtube	muscle
12	chr16:69602600-69630200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:69602600-69630800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:69602800-69627800	Weak transcription	Fetal Kidney	kidney
15	chr16:69602800-69629200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:69603000-69627800	Weak transcription	Brain Substantia Nigra	brain
17	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr16:69603200-69627800	Weak transcription	Primary B cells from cord blood	blood
19	chr16:69603200-69629600	Weak transcription	NH-A	brain
20	chr16:69603400-69623600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr16:69603600-69625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:69603600-69627000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr16:69603600-69629200	Weak transcription	HUVEC	blood vessel
24	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr16:69604000-69627800	Weak transcription	Fetal Lung	lung
26	chr16:69604000-69628000	Weak transcription	Primary T cells from cord blood	blood
27	chr16:69604000-69629000	Weak transcription	NHLF	lung
28	chr16:69605400-69629200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr16:69609600-69627400	Weak transcription	Fetal Intestine Large	intestine
32	chr16:69610000-69623400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr16:69610600-69629200	Weak transcription	Aorta	Aorta
34	chr16:69610800-69623200	Weak transcription	Psoas Muscle	Psoas
35	chr16:69610800-69628600	Weak transcription	Left Ventricle	heart
36	chr16:69610800-69630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr16:69610800-69642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:69611000-69628000	Weak transcription	Brain Angular Gyrus	brain
39	chr16:69611000-69628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr16:69611000-69629200	Weak transcription	HMEC	breast
41	chr16:69611200-69627800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr16:69611200-69645600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr16:69611400-69622800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr16:69611600-69628000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr16:69611600-69628400	Weak transcription	NHDF-Ad	bronchial
46	chr16:69611600-69629000	Weak transcription	Brain Hippocampus Middle	brain
47	chr16:69611800-69626400	Weak transcription	Osteobl	bone
48	chr16:69611800-69628800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr16:69611800-69629200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr16:69612400-69627400	Weak transcription	Liver	Liver

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