Variant report

Variant	rs17231138
Chromosome Location	chr16:69627091-69627092
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:69622847..69627243-chr16:69629072..69632922,5	K562	blood:
2	chr16:69626084..69628621-chr16:69630498..69632392,2	MCF-7	breast:
3	chr16:69601805..69603372-chr16:69624249..69627246,2	K562	blood:
4	chr16:69598077..69601503-chr16:69626680..69629192,3	K562	blood:
5	chr16:69598077..69601688-chr16:69626647..69629635,5	K562	blood:
6	chr16:69626497..69629815-chr16:69635575..69638165,3	K562	blood:
7	chr16:69624364..69627243-chr16:69629072..69631620,3	K562	blood:
8	chr16:69620967..69623720-chr16:69625732..69628226,3	K562	blood:
9	chr16:69618114..69619949-chr16:69626325..69629479,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223109	Chromatin interaction
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11863900	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864904	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437137	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.87[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45564335	1.00[ASN][1000 genomes]
rs55844704	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000913	1.00[ASN][1000 genomes]
rs56043436	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105992	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170853	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186702	1.00[ASN][1000 genomes]
rs56221028	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369384	1.00[ASN][1000 genomes]
rs62057900	1.00[ASN][1000 genomes]
rs6499230	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs689454	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs689461	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7190756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7193205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72783105	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783117	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783118	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783119	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783121	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783128	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783158	1.00[ASN][1000 genomes]
rs72783160	1.00[ASN][1000 genomes]
rs72783163	1.00[ASN][1000 genomes]
rs72783165	1.00[ASN][1000 genomes]
rs72783174	1.00[ASN][1000 genomes]
rs72783183	1.00[ASN][1000 genomes]
rs72783184	1.00[ASN][1000 genomes]
rs72783188	1.00[ASN][1000 genomes]
rs72783189	1.00[ASN][1000 genomes]
rs72783195	1.00[ASN][1000 genomes]
rs72783198	1.00[ASN][1000 genomes]
rs72799373	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799378	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799379	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799381	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799385	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799386	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799387	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799393	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799394	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801347	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801352	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801354	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054051	1.00[YRI][hapmap]
rs8055148	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602000-69633000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:69602200-69628600	Weak transcription	Right Atrium	heart
3	chr16:69602200-69631600	Weak transcription	Pancreas	Pancrea
4	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
5	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
7	chr16:69602600-69628600	Weak transcription	Thymus	Thymus
8	chr16:69602600-69628800	Weak transcription	Right Ventricle	heart
9	chr16:69602600-69629600	Weak transcription	HSMMtube	muscle
10	chr16:69602600-69630200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr16:69602600-69630800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:69602800-69627800	Weak transcription	Fetal Kidney	kidney
13	chr16:69602800-69629200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:69603000-69627800	Weak transcription	Brain Substantia Nigra	brain
15	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr16:69603200-69627800	Weak transcription	Primary B cells from cord blood	blood
17	chr16:69603200-69629600	Weak transcription	NH-A	brain
18	chr16:69603600-69629200	Weak transcription	HUVEC	blood vessel
19	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr16:69604000-69627800	Weak transcription	Fetal Lung	lung
21	chr16:69604000-69628000	Weak transcription	Primary T cells from cord blood	blood
22	chr16:69604000-69629000	Weak transcription	NHLF	lung
23	chr16:69605400-69629200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr16:69609600-69627400	Weak transcription	Fetal Intestine Large	intestine
27	chr16:69610600-69629200	Weak transcription	Aorta	Aorta
28	chr16:69610800-69628600	Weak transcription	Left Ventricle	heart
29	chr16:69610800-69630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr16:69610800-69642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr16:69611000-69628000	Weak transcription	Brain Angular Gyrus	brain
32	chr16:69611000-69628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr16:69611000-69629200	Weak transcription	HMEC	breast
34	chr16:69611200-69627800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr16:69611200-69645600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr16:69611600-69628000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr16:69611600-69628400	Weak transcription	NHDF-Ad	bronchial
38	chr16:69611600-69629000	Weak transcription	Brain Hippocampus Middle	brain
39	chr16:69611800-69628800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr16:69611800-69629200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr16:69612400-69627400	Weak transcription	Liver	Liver
42	chr16:69612400-69643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr16:69612600-69628000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr16:69612600-69629000	Weak transcription	NHEK	skin
45	chr16:69613200-69627200	Weak transcription	Small Intestine	intestine
46	chr16:69614000-69643200	Weak transcription	Colon Smooth Muscle	Colon
47	chr16:69614000-69644400	Weak transcription	Adipose Nuclei	Adipose
48	chr16:69614600-69627800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr16:69615600-69629200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr16:69616600-69627400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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