Variant report

Variant	rs72801339
Chromosome Location	chr16:69648154-69648155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69647740..69649767-chr16:69649772..69651715,2	MCF-7	breast:
2	chr16:69645838..69648346-chr16:69654090..69655610,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11863900	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864904	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437137	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958951	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300801	1.00[ASN][1000 genomes]
rs45564335	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844704	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000913	1.00[ASN][1000 genomes]
rs56043436	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105992	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170853	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186702	1.00[ASN][1000 genomes]
rs56221028	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369384	1.00[ASN][1000 genomes]
rs62057900	1.00[ASN][1000 genomes]
rs6499230	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499238	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689461	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7193205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783105	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783117	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783118	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783119	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783121	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783128	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783158	1.00[ASN][1000 genomes]
rs72783160	1.00[ASN][1000 genomes]
rs72783163	1.00[ASN][1000 genomes]
rs72783165	1.00[ASN][1000 genomes]
rs72783174	1.00[ASN][1000 genomes]
rs72783183	1.00[ASN][1000 genomes]
rs72783184	1.00[ASN][1000 genomes]
rs72783188	1.00[ASN][1000 genomes]
rs72783189	1.00[ASN][1000 genomes]
rs72783195	1.00[ASN][1000 genomes]
rs72783198	1.00[ASN][1000 genomes]
rs72785009	1.00[ASN][1000 genomes]
rs72785012	1.00[ASN][1000 genomes]
rs72799373	1.00[ASN][1000 genomes]
rs72799378	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799379	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799381	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799385	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799386	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799387	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799393	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799394	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801347	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801352	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801354	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	1.00[ASN][1000 genomes]
rs8055148	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062809	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446263	chr16:69647964-69648281	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
2	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr16:69617600-69653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:69624200-69669600	Weak transcription	Ovary	ovary
7	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
8	chr16:69630000-69652000	Weak transcription	HUVEC	blood vessel
9	chr16:69633800-69653000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr16:69639400-69663400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr16:69640800-69649800	Weak transcription	Pancreas	Pancrea
12	chr16:69642800-69649200	Weak transcription	Fetal Stomach	stomach
13	chr16:69643400-69652200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:69643600-69648600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:69643600-69650400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr16:69643800-69648200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr16:69644000-69657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:69644200-69648400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr16:69644800-69666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:69645200-69648200	Enhancers	Hela-S3	cervix
22	chr16:69645400-69648400	Enhancers	Small Intestine	intestine
23	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:69645600-69649600	Weak transcription	NHLF	lung
25	chr16:69645600-69649800	Weak transcription	Gastric	stomach
26	chr16:69645600-69652200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:69645600-69660400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr16:69645800-69649800	Weak transcription	Aorta	Aorta
29	chr16:69645800-69649800	Weak transcription	Left Ventricle	heart
30	chr16:69645800-69649800	Weak transcription	Psoas Muscle	Psoas
31	chr16:69645800-69649800	Weak transcription	Right Ventricle	heart
32	chr16:69645800-69649800	Weak transcription	Spleen	Spleen
33	chr16:69645800-69650000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr16:69645800-69652200	Weak transcription	HSMMtube	muscle
35	chr16:69645800-69661400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
38	chr16:69646000-69648400	Genic enhancers	HepG2	liver
39	chr16:69646000-69652000	Weak transcription	Brain Germinal Matrix	brain
40	chr16:69646400-69648200	Enhancers	Fetal Intestine Large	intestine
41	chr16:69646400-69648200	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr16:69646400-69648200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr16:69646400-69648200	Enhancers	Osteobl	bone
44	chr16:69646400-69650400	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr16:69646600-69648200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr16:69646600-69648200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:69646600-69648200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr16:69646600-69648200	Flanking Active TSS	NHEK	skin
49	chr16:69646600-69648400	Enhancers	Fetal Intestine Small	intestine
50	chr16:69646600-69661400	Weak transcription	NH-A	brain

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