Variant report

Variant	rs72801347
Chromosome Location	chr16:69664555-69664556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11863900	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864904	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437137	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958951	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231138	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300801	1.00[ASN][1000 genomes]
rs45564335	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55844704	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000913	1.00[ASN][1000 genomes]
rs56043436	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105992	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170853	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186702	1.00[ASN][1000 genomes]
rs56221028	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369384	1.00[ASN][1000 genomes]
rs62057900	1.00[ASN][1000 genomes]
rs6499230	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499238	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs689454	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689461	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190756	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7193205	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72783105	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783117	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783118	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783119	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783121	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783128	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783158	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783160	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783163	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783165	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783174	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783183	1.00[ASN][1000 genomes]
rs72783184	1.00[ASN][1000 genomes]
rs72783188	1.00[ASN][1000 genomes]
rs72783189	1.00[ASN][1000 genomes]
rs72783195	1.00[ASN][1000 genomes]
rs72783198	1.00[ASN][1000 genomes]
rs72785009	1.00[ASN][1000 genomes]
rs72785012	1.00[ASN][1000 genomes]
rs72785019	1.00[ASN][1000 genomes]
rs72785020	1.00[ASN][1000 genomes]
rs72799373	1.00[ASN][1000 genomes]
rs72799378	1.00[ASN][1000 genomes]
rs72799379	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799381	1.00[ASN][1000 genomes]
rs72799385	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799386	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799387	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799393	1.00[ASN][1000 genomes]
rs72799394	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801339	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801352	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801354	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	1.00[ASN][1000 genomes]
rs8055148	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062809	1.00[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69624200-69669600	Weak transcription	Ovary	ovary
2	chr16:69644800-69666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
7	chr16:69647200-69669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr16:69647600-69670200	Weak transcription	Fetal Kidney	kidney
9	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr16:69647800-69669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:69647800-69669200	Weak transcription	Adipose Nuclei	Adipose
12	chr16:69648000-69669200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr16:69648000-69669600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr16:69648400-69668400	Weak transcription	HMEC	breast
15	chr16:69648800-69668400	Weak transcription	Dnd41	blood
16	chr16:69650200-69670000	Weak transcription	Pancreas	Pancrea
17	chr16:69650200-69670200	Weak transcription	Gastric	stomach
18	chr16:69650200-69670200	Weak transcription	Spleen	Spleen
19	chr16:69650400-69669200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr16:69650600-69670000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr16:69653000-69668800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr16:69653600-69669400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr16:69653600-69669800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr16:69653600-69670000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr16:69653600-69680800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr16:69653800-69669200	Weak transcription	Fetal Muscle Leg	muscle
28	chr16:69653800-69670000	Weak transcription	Right Ventricle	heart
29	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr16:69653800-69670200	Weak transcription	Brain Germinal Matrix	brain
32	chr16:69654000-69667400	Weak transcription	Colon Smooth Muscle	Colon
33	chr16:69654200-69669800	Weak transcription	Brain Anterior Caudate	brain
34	chr16:69654200-69670000	Weak transcription	Brain Hippocampus Middle	brain
35	chr16:69654200-69670200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
37	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
39	chr16:69655000-69666800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr16:69655400-69667000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr16:69656000-69670600	Weak transcription	Small Intestine	intestine
42	chr16:69658800-69669000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr16:69659200-69670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr16:69659400-69664800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr16:69659800-69666800	Strong transcription	Placenta	Placenta
46	chr16:69659800-69669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:69660000-69664600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr16:69660000-69666800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr16:69660000-69669000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr16:69660200-69670200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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