Variant report

Variant	rs72801354
Chromosome Location	chr16:69685034-69685035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:69685010-69685066	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
NFAT5	TF binding region

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs11863900	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864904	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437137	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958951	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958953	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230557	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230612	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231138	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231474	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297088	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297207	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298718	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300801	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45564335	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844704	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897481	1.00[ASN][1000 genomes]
rs56000913	1.00[ASN][1000 genomes]
rs56043436	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073658	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105992	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127339	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170853	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171157	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186702	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56221028	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369384	1.00[ASN][1000 genomes]
rs62057900	1.00[ASN][1000 genomes]
rs6499230	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499238	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689453	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689454	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689461	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190756	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7193205	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7203292	1.00[ASN][1000 genomes]
rs7204326	1.00[ASN][1000 genomes]
rs72783105	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783116	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783117	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783119	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783128	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783158	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783160	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783163	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783165	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783174	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783183	1.00[ASN][1000 genomes]
rs72783184	1.00[ASN][1000 genomes]
rs72783188	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783189	1.00[ASN][1000 genomes]
rs72783195	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72783198	1.00[ASN][1000 genomes]
rs72785009	1.00[ASN][1000 genomes]
rs72785012	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72785019	1.00[ASN][1000 genomes]
rs72785020	1.00[ASN][1000 genomes]
rs72785024	1.00[ASN][1000 genomes]
rs72785026	1.00[ASN][1000 genomes]
rs72785029	1.00[ASN][1000 genomes]
rs72785033	1.00[ASN][1000 genomes]
rs72785034	1.00[ASN][1000 genomes]
rs72785037	1.00[ASN][1000 genomes]
rs72785038	1.00[ASN][1000 genomes]
rs72785045	1.00[ASN][1000 genomes]
rs72799373	1.00[ASN][1000 genomes]
rs72799378	1.00[ASN][1000 genomes]
rs72799379	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799381	1.00[ASN][1000 genomes]
rs72799385	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799386	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799387	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799393	1.00[ASN][1000 genomes]
rs72799394	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799398	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799400	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799402	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801305	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801307	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801308	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801312	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801314	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801315	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801317	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801318	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801319	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801320	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801321	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801322	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801323	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801325	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801326	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801328	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801330	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801332	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801333	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801337	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801338	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801339	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801344	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801347	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801350	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801352	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049366	1.00[ASN][1000 genomes]
rs8055148	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062809	1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
4	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
6	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
7	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr16:69670600-69689200	Weak transcription	Brain Germinal Matrix	brain
9	chr16:69670800-69689600	Weak transcription	Esophagus	oesophagus
10	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
11	chr16:69671200-69689600	Weak transcription	Spleen	Spleen
12	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:69671400-69689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:69678800-69705600	Weak transcription	Stomach Mucosa	stomach
15	chr16:69679400-69690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr16:69680400-69699000	Strong transcription	Placenta	Placenta
17	chr16:69680400-69699200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr16:69680600-69691000	Strong transcription	HMEC	breast
19	chr16:69680600-69691000	Strong transcription	HUVEC	blood vessel
20	chr16:69680600-69699200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:69680800-69685200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr16:69680800-69685200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr16:69680800-69685400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr16:69680800-69685600	Strong transcription	Hela-S3	cervix
25	chr16:69680800-69685800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr16:69680800-69690800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr16:69680800-69691000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:69680800-69691000	Strong transcription	HepG2	liver
29	chr16:69680800-69691200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr16:69680800-69691200	Strong transcription	HSMM	muscle
31	chr16:69680800-69691400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr16:69680800-69691400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:69680800-69694400	Strong transcription	Fetal Lung	lung
34	chr16:69680800-69695800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr16:69680800-69698600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:69680800-69699000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr16:69680800-69699200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr16:69680800-69699200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr16:69680800-69699200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr16:69680800-69699200	Strong transcription	Liver	Liver
41	chr16:69681000-69685400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:69681000-69685600	Strong transcription	NHDF-Ad	bronchial
43	chr16:69681000-69685800	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr16:69681000-69691400	Strong transcription	Osteobl	bone
45	chr16:69681000-69697200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr16:69681000-69699200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:69681400-69687000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr16:69681400-69689400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr16:69681400-69689400	Weak transcription	Pancreas	Pancrea
50	chr16:69681400-69689600	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links