Variant report

Variant	rs6434398
Chromosome Location	chr2:191427736-191427737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191426756..191429065-chr2:191435879..191437749,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11683734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687958	1.00[ASN][1000 genomes]
rs11688236	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105680	1.00[ASN][1000 genomes]
rs16832766	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745140	1.00[ASN][1000 genomes]
rs2736620	1.00[ASN][1000 genomes]
rs4146925	0.89[CEU][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241290	0.89[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303742	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340551	1.00[CEU][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434029	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4468843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513326	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536676	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585059	0.89[CEU][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853511	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853704	1.00[ASN][1000 genomes]
rs4853706	1.00[ASN][1000 genomes]
rs4853707	0.81[GIH][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]
rs4853715	0.89[AFR][1000 genomes]
rs5004460	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101840	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56278738	1.00[ASN][1000 genomes]
rs6434392	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434393	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6707244	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[MEX][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728161	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6736474	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744546	1.00[ASN][1000 genomes]
rs6751217	0.80[AFR][1000 genomes]
rs6755804	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570284	1.00[ASN][1000 genomes]
rs7586287	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595579	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600297	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603228	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967833	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527324	chr2:191423989-191427736	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191417600-191427800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:191425800-191428600	Enhancers	Stomach Mucosa	stomach
4	chr2:191426000-191428800	Enhancers	K562	blood
5	chr2:191426200-191428600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:191426400-191429600	Enhancers	Fetal Heart	heart
7	chr2:191426600-191428000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:191426800-191427800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:191426800-191428000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr2:191426800-191428200	Enhancers	Primary T cells from cord blood	blood
11	chr2:191426800-191428200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:191427000-191428200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:191427000-191428200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:191427000-191428200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:191427000-191428200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr2:191427000-191428200	Enhancers	HMEC	breast
17	chr2:191427000-191428600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:191427000-191428600	Enhancers	GM12878-XiMat	blood
19	chr2:191427000-191428800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr2:191427200-191428000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr2:191427200-191428200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr2:191427200-191428200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr2:191427200-191443000	Weak transcription	Right Ventricle	heart
24	chr2:191427400-191427800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:191427400-191428000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:191427400-191428000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:191427600-191428000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:191427600-191428200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr2:191427600-191428200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr2:191427600-191428200	Enhancers	Left Ventricle	heart
31	chr2:191427600-191428200	Enhancers	Pancreas	Pancrea
32	chr2:191427600-191441400	Weak transcription	Aorta	Aorta

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