Variant report

Variant	rs7586287
Chromosome Location	chr2:191469528-191469529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191464759..191466338-chr2:191468193..191471068,2	K562	blood:
2	chr2:191398124..191401338-chr2:191468460..191472195,4	K562	blood:

Variant related genes	Relation type
ENSG00000233654	Chromatin interaction
ENSG00000189362	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11683734	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687958	1.00[ASN][1000 genomes]
rs11688236	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105680	1.00[ASN][1000 genomes]
rs16832766	0.90[ASW][hapmap];0.89[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745140	1.00[ASN][1000 genomes]
rs2736620	1.00[ASN][1000 genomes]
rs4146925	1.00[ASN][1000 genomes]
rs4241290	1.00[ASN][1000 genomes]
rs4303742	0.89[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340551	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs4434029	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs4468843	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513326	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536676	0.89[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585059	1.00[ASN][1000 genomes]
rs4853511	0.89[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs4853704	1.00[ASN][1000 genomes]
rs4853706	1.00[ASN][1000 genomes]
rs4853707	0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs5004460	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs55942739	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101840	1.00[ASN][1000 genomes]
rs56278738	1.00[ASN][1000 genomes]
rs6434392	1.00[ASN][1000 genomes]
rs6434398	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707244	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728161	1.00[ASN][1000 genomes]
rs6736474	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744546	1.00[ASN][1000 genomes]
rs6755804	0.89[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570284	1.00[ASN][1000 genomes]
rs7595579	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600297	0.89[CEU][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603228	1.00[ASN][1000 genomes]
rs7605008	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967833	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834492	chr2:191438864-191646621	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191456600-191491800	Weak transcription	Aorta	Aorta
2	chr2:191457000-191471600	Weak transcription	Psoas Muscle	Psoas
3	chr2:191462000-191471600	Weak transcription	Fetal Lung	lung
4	chr2:191462000-191471600	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:191463800-191470600	Weak transcription	HMEC	breast
6	chr2:191464800-191471600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:191464800-191471800	Weak transcription	Right Atrium	heart
8	chr2:191464800-191472000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:191465000-191471800	Weak transcription	Right Ventricle	heart
10	chr2:191465400-191470000	Weak transcription	Primary T cells from cord blood	blood
11	chr2:191465600-191471600	Weak transcription	HSMMtube	muscle
12	chr2:191467000-191469600	Enhancers	Brain Angular Gyrus	brain
13	chr2:191467200-191470000	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:191467200-191470000	Enhancers	Brain Hippocampus Middle	brain
15	chr2:191468000-191473200	Enhancers	Fetal Heart	heart
16	chr2:191468200-191471600	Weak transcription	NHLF	lung
17	chr2:191468400-191471200	Weak transcription	Left Ventricle	heart
18	chr2:191468800-191470800	Enhancers	Hela-S3	cervix
19	chr2:191469400-191470600	Weak transcription	A549	lung
20	chr2:191469400-191472200	Weak transcription	Brain Anterior Caudate	brain
21	chr2:191469400-191472200	Weak transcription	Brain Substantia Nigra	brain
22	chr2:191469400-191472600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links