Variant report

Variant	rs7603228
Chromosome Location	chr2:191316995-191316996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191312393..191314160-chr2:191314674..191317293,2	K562	blood:
2	chr2:191315369..191317347-chr2:191318440..191321137,2	K562	blood:

Variant related genes	Relation type
ENSG00000272979	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11683734	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687958	1.00[ASN][1000 genomes]
rs11688236	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105680	1.00[ASN][1000 genomes]
rs16832766	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745140	1.00[ASN][1000 genomes]
rs2736620	1.00[ASN][1000 genomes]
rs4146925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241290	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303742	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340551	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434029	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4468843	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513326	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536676	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853511	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853704	1.00[ASN][1000 genomes]
rs4853706	1.00[ASN][1000 genomes]
rs4853707	1.00[ASN][1000 genomes]
rs4853715	0.87[AFR][1000 genomes]
rs5004460	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942739	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101840	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56278738	1.00[ASN][1000 genomes]
rs6434392	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434393	0.87[AFR][1000 genomes]
rs6434398	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707244	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728161	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6736474	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744546	1.00[ASN][1000 genomes]
rs6755804	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570284	1.00[ASN][1000 genomes]
rs7586287	1.00[ASN][1000 genomes]
rs7595579	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600297	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605008	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967833	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191302200-191319200	Weak transcription	Fetal Intestine Small	intestine
2	chr2:191302200-191321200	Weak transcription	Esophagus	oesophagus
3	chr2:191302400-191331000	Weak transcription	A549	lung
4	chr2:191302800-191317200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:191302800-191319400	Weak transcription	Fetal Brain Female	brain
6	chr2:191302800-191320200	Weak transcription	Fetal Thymus	thymus
7	chr2:191302800-191321200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:191303400-191321000	Weak transcription	Thymus	Thymus
9	chr2:191303400-191321200	Weak transcription	Dnd41	blood
10	chr2:191303600-191321000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:191303800-191321000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr2:191303800-191331600	Weak transcription	Brain Germinal Matrix	brain
13	chr2:191303800-191332600	Weak transcription	Fetal Intestine Large	intestine
14	chr2:191306600-191321000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:191306600-191351000	Weak transcription	Pancreas	Pancrea
16	chr2:191307600-191322600	Weak transcription	Aorta	Aorta
17	chr2:191308000-191328800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr2:191308800-191317400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:191308800-191317800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr2:191308800-191317800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:191308800-191318200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:191308800-191319000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:191308800-191320000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:191308800-191327200	Weak transcription	Right Atrium	heart
25	chr2:191309200-191322400	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:191309400-191331400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr2:191310200-191323600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr2:191310400-191331600	Weak transcription	Stomach Mucosa	stomach
29	chr2:191311400-191324200	Weak transcription	Fetal Heart	heart
30	chr2:191311600-191321400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:191311600-191321400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:191311600-191331400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr2:191311800-191317600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr2:191311800-191324600	Weak transcription	Left Ventricle	heart
35	chr2:191311800-191331400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr2:191311800-191331400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:191311800-191331600	Weak transcription	Ovary	ovary
38	chr2:191312000-191332400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:191312200-191321200	Weak transcription	Fetal Stomach	stomach
40	chr2:191312200-191324400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr2:191313000-191318200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr2:191313000-191321200	Weak transcription	Gastric	stomach
43	chr2:191313000-191331400	Weak transcription	HSMMtube	muscle
44	chr2:191313000-191333600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr2:191313200-191317800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr2:191313800-191323600	Weak transcription	Brain Anterior Caudate	brain
47	chr2:191314000-191331600	Weak transcription	Fetal Kidney	kidney
48	chr2:191315600-191318000	Enhancers	Brain Angular Gyrus	brain
49	chr2:191315800-191317400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:191315800-191317600	Enhancers	GM12878-XiMat	blood

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