Variant report

Variant	rs6736474
Chromosome Location	chr2:191404306-191404307
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr2:191403805-191405724	U2OS	brain:	n/a	n/a
2	SETDB1	chr2:191404205-191405863	K562	blood:	n/a	n/a
3	KAP1	chr2:191403997-191405465	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191400232..191401979-chr2:191403177..191404874,2	MCF-7	breast:
2	chr2:191402553..191405475-chr2:191414639..191416987,2	MCF-7	breast:

Variant related genes	Relation type
TMEM194B	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11683734	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687958	1.00[ASN][1000 genomes]
rs11688236	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105680	1.00[ASN][1000 genomes]
rs16832766	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745140	1.00[ASN][1000 genomes]
rs2736620	1.00[ASN][1000 genomes]
rs4146925	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241290	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303742	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340551	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434029	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4468843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513326	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536676	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585059	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853704	1.00[ASN][1000 genomes]
rs4853706	1.00[ASN][1000 genomes]
rs4853707	1.00[ASN][1000 genomes]
rs4853715	0.83[AFR][1000 genomes]
rs5004460	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101840	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56278738	1.00[ASN][1000 genomes]
rs6434392	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434393	0.87[AMR][1000 genomes]
rs6434398	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707244	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728161	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744546	1.00[ASN][1000 genomes]
rs6755804	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570284	1.00[ASN][1000 genomes]
rs7586287	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595579	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600297	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603228	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605008	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967833	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191400600-191404600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:191402000-191405600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:191402000-191405800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:191402400-191406600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr2:191402800-191409600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:191403000-191404400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:191403000-191404600	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:191403000-191404600	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:191403000-191405000	Weak transcription	Aorta	Aorta
10	chr2:191403000-191405000	Weak transcription	Esophagus	oesophagus
11	chr2:191403000-191405000	Weak transcription	Right Atrium	heart
12	chr2:191403000-191416800	Weak transcription	Gastric	stomach
13	chr2:191403200-191404600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:191403400-191404400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:191403800-191406600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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