Variant report

Variant	rs6592447
Chromosome Location	chr11:71641093-71641094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71641071-71641568	GM12892	blood:	n/a	n/a
2	SREBP1	chr11:71638618-71641652	GM12878	blood:	n/a	chr11:71638818-71638829
3	POLR2A	chr11:71641054-71641896	GM12892	blood:	n/a	n/a
4	POLR2A	chr11:71641044-71641617	GM12891	blood:	n/a	n/a
5	NFIC	chr11:71640963-71642934	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:71638377..71641678-chr11:71642670..71653439,17	MCF-7	breast:
2	chr11:71641032..71643202-chr11:71658397..71660024,2	MCF-7	breast:
3	chr11:71637612..71641494-chr11:71650147..71652866,4	K562	blood:

Variant related genes	Relation type
ENSG00000254469	TF binding region
ENSG00000255296	Chromatin interaction

Extended variants
information (count: 193 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs10128658	0.87[CEU][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.82[YRI][hapmap]
rs10450664	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501408	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055452	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs1057992	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736780	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736781	0.91[GIH][hapmap]
rs10736783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751188	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751189	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs10751191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751192	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793013	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10793014	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10793015	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793016	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs10898812	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235440	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs11235441	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs11235444	0.81[ASN][1000 genomes]
rs12272086	0.86[ASN][1000 genomes]
rs12272213	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs12275171	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.81[ASN][1000 genomes]
rs12290931	0.83[EUR][1000 genomes]
rs12293885	0.87[CEU][hapmap];0.81[YRI][hapmap]
rs1541304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1541306	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1548348	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1573501	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573502	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs1573503	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17161751	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161966	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs17161980	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs1791456	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1892920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892921	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs1894004	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1939242	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs1939243	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs1939247	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs2155142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155145	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155146	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2187496	0.86[CEU][hapmap];0.92[JPT][hapmap]
rs2250866	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs2276384	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276396	0.81[ASN][1000 genomes]
rs2298456	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs2298457	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs2503	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2508856	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes]
rs2508860	0.81[ASN][1000 genomes]
rs2511079	0.87[CEU][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap]
rs2511096	0.83[EUR][1000 genomes]
rs2511114	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs2511120	0.82[ASN][1000 genomes]
rs2735787	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2845860	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852365	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2885661	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2885880	0.83[JPT][hapmap]
rs3018301	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3018302	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs3018310	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[ASN][1000 genomes]
rs35844356	0.83[EUR][1000 genomes]
rs3750907	0.81[ASN][1000 genomes]
rs3750908	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs3793938	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs3814721	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3829215	1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.84[MKK][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121395	0.87[CEU][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.82[YRI][hapmap]
rs4245463	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4269951	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4338555	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs4378421	0.88[ASN][1000 genomes]
rs4387373	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes]
rs4399349	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4412771	0.86[ASN][1000 genomes]
rs4477459	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs480341	0.83[EUR][1000 genomes]
rs482197	0.85[ASN][1000 genomes]
rs488829	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs491319	0.83[EUR][1000 genomes]
rs492135	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs493065	0.87[CEU][hapmap]
rs4943821	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4944232	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.88[YRI][hapmap]
rs4944242	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs4944243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945382	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4945391	0.89[ASN][1000 genomes]
rs4945392	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945426	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs4945434	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs497761	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs498770	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs501308	0.84[EUR][1000 genomes]
rs510925	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs518959	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs538569	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs541022	0.87[CEU][hapmap];0.95[GIH][hapmap]
rs542097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs551715	0.83[EUR][1000 genomes]
rs552966	0.87[CEU][hapmap]
rs560777	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs56255748	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs564294	0.88[ASN][1000 genomes]
rs567026	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap];0.88[ASN][1000 genomes]
rs567851	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs575831	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[ASN][1000 genomes]
rs575871	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs577435	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.93[YRI][hapmap];0.82[ASN][1000 genomes]
rs579320	0.86[CEU][hapmap]
rs58417942	0.81[ASN][1000 genomes]
rs585228	0.86[CEU][hapmap]
rs592051	0.84[ASN][1000 genomes]
rs595062	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes]
rs60054591	0.81[ASN][1000 genomes]
rs607446	0.87[CEU][hapmap]
rs609500	0.83[EUR][1000 genomes]
rs610004	0.87[CEU][hapmap]
rs610041	0.87[CEU][hapmap]
rs610421	0.83[EUR][1000 genomes]
rs612255	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes]
rs612687	0.83[EUR][1000 genomes]
rs620945	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs628025	0.82[ASN][1000 genomes]
rs642573	0.87[CEU][hapmap]
rs642618	0.87[CEU][hapmap]
rs645603	0.88[ASN][1000 genomes]
rs6592448	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs6592449	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs6592450	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs6592451	1.00[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs6592453	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs6592455	0.87[CEU][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.82[YRI][hapmap]
rs6592456	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592457	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs659513	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs661290	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs671132	0.82[ASN][1000 genomes]
rs671681	0.87[CEU][hapmap]
rs673478	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs674319	0.85[ASN][1000 genomes]
rs674735	0.87[CEU][hapmap]
rs679926	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs686340	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7101553	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7102192	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs7102523	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102693	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7103210	0.86[CEU][hapmap]
rs7106653	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106730	1.00[CEU][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111379	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs7113436	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113520	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113549	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7115513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121260	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs7123992	0.82[CEU][hapmap]
rs7126394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127865	0.87[CEU][hapmap]
rs7128317	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.82[YRI][hapmap]
rs7128974	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs73531955	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543612	0.86[ASN][1000 genomes]
rs73543640	0.81[ASN][1000 genomes]
rs73543643	0.81[ASN][1000 genomes]
rs7924834	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925411	0.89[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs7925604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7930142	0.92[YRI][hapmap]
rs7930544	0.86[CEU][hapmap];0.82[YRI][hapmap]
rs7931941	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7937408	0.85[ASN][1000 genomes]
rs7938496	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7942626	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948821	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs7951564	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs947932	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs949323	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs949326	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9666346	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9735988	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6592447	CKMT2	trans	brain	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71638600-71641200	Active TSS	Fetal Kidney	kidney
2	chr11:71638600-71641200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:71638600-71641200	Active TSS	NHLF	lung
4	chr11:71638600-71641400	Active TSS	Fetal Intestine Small	intestine
5	chr11:71638600-71641600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:71638600-71641600	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr11:71638800-71641200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:71638800-71641200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:71638800-71641400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:71638800-71641600	Active TSS	H1 Cell Line	embryonic stem cell
11	chr11:71638800-71641600	Active TSS	A549	lung
12	chr11:71638800-71641600	Active TSS	HSMMtube	muscle
13	chr11:71638800-71642200	Active TSS	GM12878-XiMat	blood
14	chr11:71639000-71641800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr11:71639200-71641200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:71639200-71641200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:71639200-71641200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:71639200-71641200	Active TSS	HSMM	muscle
19	chr11:71639200-71641800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:71639400-71641200	Active TSS	Fetal Muscle Trunk	muscle
21	chr11:71640200-71641200	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr11:71640200-71641200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr11:71640200-71641600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:71640200-71641600	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr11:71640400-71641200	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr11:71640400-71641200	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr11:71640400-71641200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr11:71640400-71641200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr11:71640400-71641200	Flanking Active TSS	Placenta	Placenta
30	chr11:71640400-71641200	Flanking Active TSS	Fetal Thymus	thymus
31	chr11:71640400-71641200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr11:71640400-71641400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:71640400-71641400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:71640400-71641400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:71640400-71641600	Flanking Active TSS	Liver	Liver
36	chr11:71640400-71641600	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr11:71640400-71641600	Flanking Active TSS	Rectal Smooth Muscle	rectum
38	chr11:71640600-71641200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr11:71640600-71641200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:71640600-71641200	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr11:71640600-71641200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr11:71640600-71641200	Flanking Active TSS	Right Ventricle	heart
43	chr11:71640600-71641200	Flanking Active TSS	Thymus	Thymus
44	chr11:71640600-71641400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr11:71640600-71641400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:71640600-71641400	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr11:71640600-71641400	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr11:71640600-71641400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr11:71640600-71641400	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr11:71640600-71641400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum

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